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Daniel Bayer

dblp:17/307 · DBLP profile ↗
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3ranked-venue papers
1as first author
0since 2021 · last 2009
0000-0002-4063-4097ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2Theory of computation · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Distributed systems · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
bioinformatics workflow
0.112008
Integrating ARC grid middleware with Taverna workflows · Bioinform. 2008
Bioinformatics and computational biology › genomics
genome-wide association study
0.112008
SNPtoGO: characterizing SNPs by enriched GO terms · Bioinform. 2008
Bioinformatics and computational biology › genomics › variant annotation
SNP functional annotation
0.112008
SNPtoGO: characterizing SNPs by enriched GO terms · Bioinform. 2008
Distributed systems
grid computing
0.112008
Integrating ARC grid middleware with Taverna workflows · Bioinform. 2008

Methods — techniques the papers use, named apart from their topics

workflow engine · 0.2web services · 0.2gene ontology annotation · 0.1
YearPublicationVenuePosition
2009 Probe threshold and probe trivially perfect graphs
Daniel Bayer, Van Bang Le, H. N. de Ridder
Theor. Comput. Sci.1
2008 Integrating ARC grid middleware with Taverna workflows
abstract
SUMMARY: This work presents two independent approaches for a seamless integration of computational grids with the bioinformatics workflow suite Taverna. These are supported by a unique relational database to link applications with grid resources and presents those as workflow elements. A web portal facilitates its collaborative maintenance. The first approach implements a gateway service to handle authentication certificates and all communication with the grid. It reads the database to spawn web services for workflow elements which are in turn used by Taverna. The second approach lets Taverna communicate with the grid on its own, by means of a newly developed plug-in. It reads the database and executes the needed tasks directly on the grid. While the gateway service is non-intrusive, the plug-in has technical advantages, e.g. by allowing data to remain on the grid while being passed between workflow elements. AVAILABILITY: http://grid.inb.uni-luebeck.de/
Hajo N. Krabbenhöft, Steffen Möller, Daniel Bayer
Bioinform.3
2008 SNPtoGO: characterizing SNPs by enriched GO terms
abstract
UNLABELLED: For the analysis of complex polygenic diseases, one does not expect all patients to share the same disease-associated alleles. Not even will disease-causing variations be assigned to the identical sets of genes between patients. However, one does expect overlaps in the sets of genes that are involved and even more so in their assigned molecular processes. Furthermore, the assignment of single nucleotide polymorphisms (SNPs) to genes is highly ambiguous for intergenic SNPs. The tool presented here hence adds external information, i.e. GeneOntology (GO) terms (Gene Ontology Consortium), to the analysis of SNP data. AVAILABILITY: A web interface and source code are offered at https://webtools.imbs.uni-luebeck.de/snptogo
Daniel F. Schwarz, Oliver Hädicke, Jeanette Erdmann, Andreas Ziegler 0001, Daniel Bayer, Steffen Möller
Bioinform.5