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Steffen Lemke 0002

dblp:170/1718-2 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2016
0000-0001-5807-2865ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Graphics, computer vision, multimedia, augmented reality and games · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Computer graphics and multimedia
1 paper
Visualization and visual analytics · 77% Image and video processing · 23%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › bioimage informatics
cell tracking
0.212016
Reconstruction and Visualization of Coordinated 3D Cell Migration Based on Optical Flow · IEEE Trans. Vis. Comput. Graph. 2016
Bioinformatics and computational biology
developmental biology
0.212016
Reconstruction and Visualization of Coordinated 3D Cell Migration Based on Optical Flow · IEEE Trans. Vis. Comput. Graph. 2016
Visualization and visual analytics
flow visualization
0.212016
Reconstruction and Visualization of Coordinated 3D Cell Migration Based on Optical Flow · IEEE Trans. Vis. Comput. Graph. 2016
Image and video processing › motion estimation
optical flow
0.112016
Reconstruction and Visualization of Coordinated 3D Cell Migration Based on Optical Flow · IEEE Trans. Vis. Comput. Graph. 2016

Methods — techniques the papers use, named apart from their topics

optical flow · 0.5numerical integration · 0.5line-integral convolution · 0.2line integral convolution · 0.2
YearPublicationVenuePosition
2016 Reconstruction and Visualization of Coordinated 3D Cell Migration Based on Optical Flow
abstract
Animal development is marked by the repeated reorganization of cells and cell populations, which ultimately determine form and shape of the growing organism. One of the central questions in developmental biology is to understand precisely how cells reorganize, as well as how and to what extent this reorganization is coordinated. While modern microscopes can record video data for every cell during animal development in 3D+t, analyzing these videos remains a major challenge: reconstruction of comprehensive cell tracks turned out to be very demanding especially with decreasing data quality and increasing cell densities. In this paper, we present an analysis pipeline for coordinated cellular motions in developing embryos based on the optical flow of a series of 3D images. We use numerical integration to reconstruct cellular long-term motions in the optical flow of the video, we take care of data validation, and we derive a LIC-based, dense flow visualization for the resulting pathlines. This approach allows us to handle low video quality such as noisy data or poorly separated cells, and it allows the biologists to get a comprehensive understanding of their data by capturing dynamic growth processes in stills. We validate our methods using three videos of growing fruit fly embryos.
Christopher P. Kappe, Lucas Schutz, Stefan Gunther, Lars Hufnagel, Steffen Lemke 0002, Heike Leitte
IEEE Trans. Vis. Comput. Graph.5