EDBT 2026 Demo / reviewers in the wild / expert
Verónica G. Vergara Larrea
dblp:175/6840 · also Verónica G. Melesse Vergara, Verónica Melesse Vergara
· DBLP profile ↗
13ranked-venue papers
4as first author
9since 2021 · last 2025
0000-0002-4333-4145ORCID · conflict
Domains — the database's venue-derived domains; a paper can count in several
Systems, architecture and hardware · 12 · 4 first-author · 8 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | Lustre Unveiled: Evolution, Design, Advancements, and Current TrendsabstractThe Lustre filesystem serves as a vital element in high-performance parallel storage, meeting the rising demands of scientific, research, and enterprise environments. Widely deployed across HPC environments, ranging from small-scale applications in AI/ML, to domains like oil and gas, drug discovery, and meteorology, and manufacturing, Lustre addresses the universal challenge of efficiently accessing vast and ever-increasing volumes of data. Lustre is the filesystem of choice on six out of the top 10 fastest supercomputers in the world today, over 65% of the top 100, and also for over 60% of the top 500. Despite its widespread popularity, there is a lack of a complete and up-to-date reference, covering Lustre’s evolution, design, and various advancements made over the years. In this journal, we aim to fill this gap by providing a comprehensive journey of Lustre, including its history with significant contributions to HPC, detailed architecture and design elements, exploration of advancements added through its evolution, and future directions. Additionally, we present a comparison of Lustre with other prominent storage technologies of the era. To illustrate the current state of Lustre, we analyze several filesystem trends, including utilization, performance, and usage patterns on Orion, the Lustre filesystem on the first exascale supercomputer Frontier. We hope that this journal serves as a comprehensive educational reference for the current and future generations interested in HPC filesystem storage aspects. Anjus George, Andreas Dilger, Michael J. Brim, Rick Mohr, Amir Shehata, Jong Choi 0001, Ahmad Maroof Karimi, Jesse Hanley, James Simmons, Dominic Manno, Verónica G. Vergara Larrea, Sarp Oral, Christopher Zimmer 0001 |
ACM Trans. Storage | 11 |
| 2024 | An Evaluation of the Effect of Network Cost Optimization for Leadership Class SupercomputersabstractDragonfly-based networks are an extensively deployed network topology in large-scale high-performance computing due to their cost-effectiveness and efficiency. The US will soon have three Exascale supercomputers for leadership class workloads deployed using dragonfly networks. Compared to indirect networks of similar scale, the dragonfly network has considerably reduced cable lengths, cable counts, and switch counts, resulting in significant network cost savings for a given system size, however, these cost reductions result in reduced global minimal paths and more challenging routing. Additionally, large scale dragonfly networks often require a taper at the global link level, resulting in less bisection bandwidth than is achievable in other traditional non-blocking topologies of equivalent scale. While dragonfly networks have been extensively studied, they have yet to be fully evaluated in an extreme scale (i.e., exascale) system that targets capability workloads. In this paper, we present the results of the first large scale evaluation of a dragonfly network on an exascale system (Frontier) and compare its behavior to a similar scale fat-tree network on a previous generation TOP500 system (Summit). This evaluation aims to determine the effect of network cost optimizations by measuring a tapered topology’s impact on capability workloads. Our evaluation is based on a collection of synthetic microbenchmarks, mini-apps, and full scale applications. It compares the scaling efficiencies of each benchmark between the dragonfly-based Frontier and the fat-tree-based Summit systems. Our results show that a dragonfly network is $\sim \mathbf{3 0 \%}$ more cost efficient than a fat-tree topology, which amortizes to $\sim 3 \%$ of an exascale system cost. Furthermore, while tapered dragonfly networks impose significant tradeoffs, the impacts are not as broad as initially thought and are mostly seen in applications with global communication patterns, particularly all-to-all (e.g., FFT-based algorithms), but also local communication patterns (e.g., nearest-neighbor algorithms) that are sensitive to network performance variability. Awais Khan 0002, Jack Lange, Nick Hagerty, Edwin F. Posada, John K. Holmen, James B. White, James Austin Harris, Verónica G. Vergara Larrea, Christopher Zimmer 0001, Scott Atchley |
SC | 8 |
| 2024 | Early experiences on the OLCF Frontier system with AthenaPK and Parthenon-HydroabstractSummary The Oak Ridge Leadership Computing Facility (OLCF) has been preparing the nation's first exascale system, Frontier, for production and end users. Frontier is based on HPE Cray's new EX architecture and Slingshot interconnect and features 74 cabinets of optimized 3rd Gen AMD EPYC CPUs for HPC and AI and AMD Instinct 250X accelerators. As a part of this preparation, “real‐world” user codes have been selected to help assess the functionality, performance, and usability of the system. This article describes early experiences using the system in collaboration with the Hamburg Observatory for two selected codes, which have since been adopted in the OLCF test harness. Experiences discussed include efforts to resolve performance variability and per‐cycle slowdowns. Results are shown for a performance portable astrophysical magnetohydronamics code, AthenaPK, and a mini‐application stressing the core functionality of a performance portable block‐structured adaptive mesh refinement framework, Parthenon‐Hydro. These results show good scaling characteristics to the full system. At the largest scale, the Parthenon‐Hydro miniapp reaches a total of zone‐cycles/s on 9216 nodes (73,728 logical GPUs) at 92% weak scaling parallel efficiency (starting from a single node using a second‐order, finite‐volume method). John K. Holmen, Philipp Grete, Verónica G. Vergara Larrea |
Concurr. Comput. Pract. Exp. | 3 |
| 2024 | Early experiences evaluating the HPE/Cray ecosystem for AMD GPUsabstractSummary The Oak Ridge Leadership Computing Facility (OLCF) has a long history of supporting and promoting GPU‐accelerated computing starting with the deployment of the Titan supercomputer in 2021 and continuing with the Summit supercomputer which has a theoretical peak performance of approximately 200 petaflops. Because the majority of Summit's computational power comes from its 27,972 GPUs, users must port their applications to one of the supported programming models in order to make efficient use of the system. To prepare the transition to Frontier, the OLCF's exascale supercomputer, users will need to adapt to an entirely new ecosystem which will include new hardware and software technologies. First, users will need to familiarize themselves with the AMD Radeon GPU architecture. Furthermore, users who have been previously relying on CUDA will need to transition to the Heterogeneous‐Computing Interface for Portability (HIP) or one of the other supported programming models (e.g., OpenMP, OpenACC). In this work, we describe our initial experiences and lessons learned in porting three applications or proxy apps currently running on Summit to the HPE/Cray ecosystem to leverage the compute power from AMD GPUs: minisweep, GenASiS, and Sparkler. Each one is representative of current production workloads utilized at the OLCF, different programming languages, and different programming models. Verónica G. Vergara Larrea, Reuben D. Budiardja, Wayne Joubert |
Concurr. Comput. Pract. Exp. | 1 |
| 2024 | A step towards the final frontier: Lessons learned from acceptance testing of the first HPE/Cray EX 3000 system at ORNLabstractSummary In this article, we summarize the deployment of the Air Force Weather (AFW) HPC11 system at Oak Ridge National Laboratory (ORNL) including the process followed to successfully complete acceptance testing of the system. HPC11 is the first HPE/Cray EX 3000 system that has been successfully released to its user community in a federal facility. HPC11 consists of two identical 800‐node supercomputers, Fawbush and Miller, with access to two independent and identical lustre parallel file systems. HPC11 is equipped with Slingshot 10 interconnect technology and relies on the HPE Performance Cluster Manager software for system configuration. ORNL has a clearly defined acceptance testing process used to ensure that every new system deployed can provide the necessary capabilities to support user workloads. We worked closely with HPE and AFW to develop a set of tests that used the United Kingdom's Meteorological Office's Unified Model and 4‐dimensional variational data assimilation. We also included benchmarks and applications from the Oak Ridge Leadership Computing Facility portfolio to fully exercise the HPE/Cray programming environment and evaluate the functionality and performance of the system. Acceptance testing of HPC11 required parallel execution of each element on Fawbush and Miller. In addition, careful coordination was needed to ensure successful acceptance of the newly deployed lustre file systems alongside the compute resources. In this work, we present test results from specific system components and provide an overview of the issues identified, challenges encountered, and the lessons learned along the way. Verónica G. Vergara Larrea, Reuben D. Budiardja, Paul Peltz, Jeffery Niles, Christopher Zimmer 0001, Daniel Dietz, Christopher Fuson, Paul Newman 0005, James Simmons, Christopher Muzyn |
Concurr. Comput. Pract. Exp. | 1 |
| 2023 | Frontier: Exploring ExascaleabstractAs the US Department of Energy (DOE) computing facilities began deploying petascale systems in 2008, DOE was already setting its sights on exascale. In that year, DARPA published a report on the feasibility of reaching exascale. The report authors identified several key challenges in the pursuit of exascale including power, memory, concurrency, and resiliency. That report informed the DOE's computing strategy for reaching exascale. With the deployment of Oak Ridge National Laboratory's Frontier supercomputer, we have officially entered the exascale era. In this paper, we discuss Frontier's architecture, how it addresses those challenges, and describe some early application results from Oak Ridge Leadership Computing Facility's Center of Excellence and the Exascale Computing Project. Scott Atchley, Christopher Zimmer 0001, Jack Lange, David E. Bernholdt, Verónica G. Vergara Larrea, Michael J. Brim, Reuben D. Budiardja, Sunita Chandrasekaran, Markus Eisenbach 0002, Thomas M. Evans 0001, Matthew Ezell, Nicholas Frontiere, Antigoni Georgiadou, Joseph Glenski, Philipp Grete, Steven P. Hamilton, John K. Holmen, Axel Huebl, Daniel A. Jacobson, Wayne Joubert, Kim H. McMahon, Elia Merzari, Stan G. Moore, Andrew Myers 0001, Stephen Nichols, Sarp Oral, Thomas Papatheodore, Danny Perez, David M. Rogers 0001, Evan Schneider, Jean-Luc Vay, P. K. Yeung |
SC | 5 |
| 2023 | Studying performance portability of LAMMPS across diverse GPU-based platformsabstractSummary The molecular dynamics simulation software, LAMMPS, utilizes the Kokkos acceleration library to port computation to a diverse set of architectures including those based on GPU accelerators. In addition to Kokkos, LAMMPS contains a vast code base that leverages the CUDA application programming interface using library functions such as cuFFT , CUDA's fast‐fourier transform (FFT) library, and, more recently, also support for AMD's Heterogeneous Interface for Portability (HIP) that is rapidly growing. While preparing LAMMPS tests for the AMD GPU‐based test system precursors to Frontier, we investigated several strategies for accelerating LAMMPS on AMD GPUs, using the AMD Instinct MI100 and MI250X. In this work, we integrated the HIP FFT library, hipFFT , into the particle‐particle particle‐mesh (PPPM) long‐range solver, which allowed the porting of PPPM calculations to the GPUs. Kokkos behavior on the MI100 and MI250X was also investigated through the package kokkos command of LAMMPS, targeting communication, memory usage, and particle grid decomposition. The Tersoff, Reax, Lennard‐Jones (LJ), EAM, Granular, and PPPM potentials were investigated in this effort, and results from these experiments are provided. The selected potentials were run on Spock (AMD Instinct MI100), Crusher (AMD Instinct MI250X), AFW HPC11 (NVIDIA A100) and Summit (NVIDIA V100), for comparison. Operational roofline models were constructed and analyzed for the Tersoff, Reax, and Lennard–Jones potentials on Crusher and Summit. Nick Hagerty, Verónica G. Vergara Larrea, Arnold N. Tharrington |
Concurr. Comput. Pract. Exp. | 2 |
| 2022 | First Experiences in Performance Benchmarking with the New SPEChpc 2021 SuitesabstractModern High Performance Computing (HPC) sys-tems are built with innovative system architectures and novel programming models to further push the speed limit of computing. The increased complexity poses challenges for performance portability and performance evaluation. The Standard Perfor-mance Evaluation Corporation (SPEC) has a long history of producing industry-standard benchmarks for modern computer systems. SPEC's newly released SPEChpc 2021 benchmark suites, developed by the High Performance Group, are a bold attempt to provide a fair and objective benchmarking tool designed for state-of-the-art HPC systems. With the support of multiple host and accelerator programming models, the suites are portable across both homogeneous and heterogeneous architectures. Different workloads are developed to fit system sizes ranging from a few compute nodes to a few hundred compute nodes. In this work we present our first experiences in performance benchmarking the new SPEChpc2021 suites and evaluate their portability and basic performance characteristics on various popular and emerging HPC architectures, including x86 CPU, NVIDIA GPU, and AMD GPU. This study provides a first-hand experience of executing the SPEChpc 2021 suites at scale on production HPC systems, discusses real-world use cases, and serves as an initial guideline for using the benchmark suites. Holger Brunst, Sunita Chandrasekaran, Florina M. Ciorba, Nick Hagerty, Robert Henschel, Guido Juckeland, Junjie Li 0003, Verónica G. Vergara Larrea, Sandra Wienke, Miguel Zavala |
CCGRID | 8 |
| 2022 | Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery
Nicholas Choma, Andrew Deru Chen, Mikaela Cashman, Érica T. Prates, Verónica G. Vergara Larrea, Manesh Shah, Austin Clyde, Thomas S. Brettin, Bert de Jong, Martha S. Head, Rick L. Stevens, Peter Nugent, Daniel A. Jacobson, James B. Brown |
ICLR | 6 |
| 2020 | Experiences in porting mini-applications to OpenACC and OpenMP on heterogeneous systemsabstractSummary This article studies mini‐applications—Minisweep, GenASiS, GPP, and FF—that use computational methods commonly encountered in HPC. We have ported these applications to develop OpenACC and OpenMP versions, and evaluated their performance on Titan (Cray XK7 with K20x GPUs), Cori (Cray XC40 with Intel KNL), Summit (IBM AC922 with Volta GPUs), and Cori‐GPU (Cray CS‐Storm 500NX with Intel Skylake and Volta GPUs). Our goals are for these new ports to be useful to both application and compiler developers, to document and describe the lessons learned and the methodology to create optimized OpenMP and OpenACC versions, and to provide a description of possible migration paths between the two specifications. Cases where specific directives or code patterns result in improved performance for a given architecture are highlighted. We also include discussions of the functionality and maturity of the latest compilers available on the above platforms with respect to OpenACC or OpenMP implementations. Verónica G. Vergara Larrea, Reuben D. Budiardja, Rahulkumar Gayatri, Christopher S. Daley, Oscar R. Hernandez, Wayne Joubert |
Concurr. Comput. Pract. Exp. | 1 |
| 2019 | End-to-end I/O portfolio for the summit supercomputing ecosystemabstractThe I/O subsystem for the Summit supercomputer, No. 1 on the Top500 list, and its ecosystem of analysis platforms is composed of two distinct layers, namely the in-system layer and the center-wide parallel file system layer (PFS), Spider 3. The in-system layer uses node-local SSDs and provides 26.7 TB/s for reads, 9.7 TB/s for writes, and 4.6 billion IOPS to Summit. The Spider 3 PFS layer uses IBM's Spectrum Scale™ and provides 2.5 TB/s and 2.6 million IOPS to Summit and other systems. While deploying them as two distinct layers was operationally efficient, it also presented usability challenges in terms of multiple mount points and lack of transparency in data movement. To address these challenges, we have developed novel end-to-end I/O solutions for the concerted use of the two storage layers. We present the I/O subsystem architecture, the end-to-end I/O solution space, their design considerations and our deployment experience. Sarp Oral, Sudharshan S. Vazhkudai, Feiyi Wang, Christopher Zimmer 0001, Christopher Brumgard, Jesse Hanley, George Markomanolis, Ross G. Miller, Dustin Leverman, Scott Atchley, Verónica G. Vergara Larrea |
SC | 11 |
| 2019 | Are we witnessing the spectre of an HPC meltdown?abstractSummary We measure and analyze the performance observed when running applications and benchmarks before and after the Meltdown and Spectre fixes have been applied to the Cray supercomputers and supporting systems at the Oak Ridge Leadership Computing Facility (OLCF). Of particular interest is the effect of these fixes on applications selected from the OLCF portfolio when running at scale. This comprehensive study presents results from experiments run on Titan, Eos, Cumulus, and Percival supercomputers at the OLCF. The results from this study are useful for HPC users running on Cray supercomputers and serve to better understand the impact that these two vulnerabilities have on diverse HPC workloads at scale. Verónica G. Vergara Larrea, Michael J. Brim, Wayne Joubert, Swen Böhm, Matthew B. Baker, Oscar R. Hernandez, Sarp Oral, James Simmons, Don E. Maxwell |
Concurr. Comput. Pract. Exp. | 1 |
| 2018 | The design, deployment, and evaluation of the CORAL pre-exascale systems
Sudharshan S. Vazhkudai, Bronis R. de Supinski, Arthur S. Bland, Al Geist, James C. Sexton, James A. Kahle, Christopher Zimmer 0001, Scott Atchley, Sarp Oral, Don E. Maxwell, Verónica G. Vergara Larrea, Adam Bertsch, Robin Goldstone, Wayne Joubert, Christopher M. Chambreau, David Appelhans, Robert Blackmore, Ben Casses, George Chochia, Gene Davison, Matthew Ezell, Thomas Gooding, Elsa Gonsiorowski, Leopold Grinberg, Bill Hanson, Bill Hartner, Ian Karlin, Matthew L. Leininger, Dustin Leverman, Chris Marroquin, Adam Moody, Martin Ohmacht, Ramesh Pankajakshan, Fernando Pizzano, James H. Rogers, Bryan S. Rosenburg, Drew Schmidt, Mallikarjun Shankar, Feiyi Wang, Py Watson, Bob Walkup, Lance D. Weems, Junqi Yin |
SC | 11 |