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Emmanuelle Jousselin

dblp:176/9938 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2016
0009-0005-8030-0082ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › phylogenetics
gene tree reconciliation
0.212016
SylvX: a viewer for phylogenetic tree reconciliations · Bioinform. 2016
Bioinformatics and computational biology
phylogenetics
0.212016
SylvX: a viewer for phylogenetic tree reconciliations · Bioinform. 2016
Bioinformatics and computational biology › phylogenetics › phyloinformatics
phylogenetic tree visualization
0.212016
SylvX: a viewer for phylogenetic tree reconciliations · Bioinform. 2016

Methods — techniques the papers use, named apart from their topics

tree reconciliation · 0.2graphical operators · 0.2
YearPublicationVenuePosition
2016 SylvX: a viewer for phylogenetic tree reconciliations
abstract
MOTIVATION: Reconciliation methods aim at recovering the evolutionary processes that shaped the history of a given gene family including events such as duplications, transfers and losses by comparing the discrepancies between the topologies of the associated gene and species trees. These methods are also used in the framework of host/parasite studies to recover co-diversification scenarios including co-speciation events, host-switches and extinctions. These evolutionary processes can be graphically represented as nested trees. These interconnected graphs can be visually messy and hard to interpret, and despite the fact that reconciliations are increasingly used, there is a shortage of tools dedicated to their graphical management. Here we present SylvX, a reconciliation viewer which implements classical phylogenetic graphic operators (swapping, highlighting, etc.) and new methods to ease interpretation and comparison of reconciliations (multiple maps, moving, shrinking sub-reconciliations). AVAILABILITY AND IMPLEMENTATION: SylvX is an open source, cross-platform, standalone editor available for Windows and Unix-like systems including OSX. It is publicly available at www.sylvx.org.
François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry
Bioinform.5