Demo Data from EDBT 2026 / reviewers in the wild / expert
Joonhyeok Choi
dblp:177/6519
· DBLP profile ↗
1ranked-venue papers
1as first author
1since 2021 · last 2026
0000-0002-3800-0394ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › structural biology
NMR spectroscopy |
1.0 | 1 | 2026 | ONEST: a web-based platform for the rapid and robust analysis of protein excited states through CEST spectroscopy · Bioinform. 2026 |
Bioinformatics and computational biology
protein dynamics |
1.0 | 1 | 2026 | ONEST: a web-based platform for the rapid and robust analysis of protein excited states through CEST spectroscopy · Bioinform. 2026 |
Methods — techniques the papers use, named apart from their topics
multi-field fitting · 1.0analytical two-state exchange model · 1.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | ONEST: a web-based platform for the rapid and robust analysis of protein excited states through CEST spectroscopyabstractSUMMARY: The biological function of proteins is often driven by "invisible" excited states-transient, low-population conformations that remain undetectable by conventional structural methods. Chemical Exchange Saturation Transfer (CEST) NMR spectroscopy is a powerful technique for characterizing these states; however, the complexity of data analysis and the computational cost of numerical fitting have hindered its widespread adoption. To address these challenges, we present ONEST (Optimized Novel Exchange Saturation Transfer), a user-friendly web server designed to automate and accelerate CEST analysis. ONEST utilizes a simultaneous multi-field fitting algorithm that leverages exact analytical solutions for two-state exchange (Baldwin model) rather than computationally intensive numerical integration. This approach incorporates a rigorous correction for radio-frequency (RF) field inhomogeneity and resolves parameter degeneracy by jointly fitting datasets acquired at distinct RF field strengths. Validation against synthetic datasets yielded reduced c2 values near unity (∼1.05), confirming that the analytical approach recovers kinetic parameters with accuracy comparable to full Bloch-McConnell simulations but at a fraction of the computational cost. Furthermore, application to the anti-HIV lectin OAA successfully characterized slow conformational exchange (kex = 279 s-1) involving a minor population of 3%. By streamlining the extraction of kinetic and thermodynamic parameters, ONEST significantly lowers the technical barrier to entry, enabling a broader range of researchers to investigate protein dynamics at atomic resolution. CONTACT: [email protected]. AVAILABILITY AND IMPLEMENTATION: ONEST is available through the web server at http://onest.ai.kr. Joonhyeok Choi, Sang-yeop Lee, Kyungdoe Han, Marta G. Carneiro, Kyoung-Seok Ryu |
Bioinform. | 1 |