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XiaoShu Cai

dblp:186/5480 · DBLP profile ↗
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3ranked-venue papers
0as first author
0since 2021 · last 2019
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2Artificial intelligence and machine learning · 1Software engineering, systems software and programming languages · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › drug discovery › ADMET prediction
blood-brain barrier permeability prediction
0.312017
Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications · Bioinform. 2017
Bioinformatics and computational biology › drug discovery
drug repositioning
0.312017
Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications · Bioinform. 2017

Methods — techniques the papers use, named apart from their topics

support vector machine · 0.3monte carlo cross validation · 0.3
YearPublicationVenuePosition
2019 Learning - based Adaptation Framework for Elastic Software Systems
abstract
Adaptation is a concern for elastic software systems.Conventional methods like Brownout try to deactivate optional computation per request after decoupling the software into different components, to lower the workload when peaks occur.However, resource-intensive components are not always easy to isolate, and some software systems are even not separable.In this paper, we propose a new paradigm that provides each core and mandatory component a corresponding alternative component, with similar function but lower resource consumption, and use reinforcement learning in a feedback loop control for the selfadaptation process.We modified the widely used benchmark RU-BiS to make it weakly coupled and add alternative components.Experiments show that our framework dramatically improves both the efficiency and effectiveness of self-adaptation.
Yingcheng Sun, XiaoShu Cai, Kenneth A. Loparo
SEKE2
2017 Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications
abstract
Motivation: Blood-Brain-Barrier (BBB) is a rigorous permeability barrier for maintaining homeostasis of Central Nervous System (CNS). Determination of compound's permeability to BBB is prerequisite in CNS drug discovery. Existing computational methods usually predict drug BBB permeability from chemical structure and they generally apply to small compounds passing BBB through passive diffusion. As abundant information on drug side effects and indications has been recorded over time through extensive clinical usage, we aim to explore BBB permeability prediction from a new angle and introduce a novel approach to predict BBB permeability from drug clinical phenotypes (drug side effects and drug indications). This method can apply to both small compounds and macro-molecules penetrating BBB through various mechanisms besides passive diffusion. Results: We composed a training dataset of 213 drugs with known brain and blood steady-state concentrations ratio and extracted their side effects and indications as features. Next, we trained SVM models with polynomial kernel and obtained accuracy of 76.0%, AUC 0.739, and F 1 score (macro weighted) 0.760 with Monte Carlo cross validation. The independent test accuracy was 68.3%, AUC 0.692, F 1 score 0.676. When both chemical features and clinical phenotypes were available, combining the two types of features achieved significantly better performance than chemical feature based approach (accuracy 85.5% versus 72.9%, AUC 0.854 versus 0.733, F 1 score 0.854 versus 0.725; P < e -90 ). We also conducted de novo prediction and identified 110 drugs in SIDER database having the potential to penetrate BBB, which could serve as start point for CNS drug repositioning research. Availability and Implementation: https://github.com/bioinformatics-gao/CASE-BBB-prediction-Data. Contact: [email protected]. Supplementary information: Supplementary data are available at Bioinformatics online.
Yang Chen 0022, XiaoShu Cai
Bioinform.3
2015 Combing Human Disease Genetics and Mouse Model Phenotypes Towards Drug Repositioning for Parkinson's Disease
Yang Chen 0022, XiaoShu Cai
AMIA2