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Artur Panszczyk

dblp:187/5906 · DBLP profile ↗
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2ranked-venue papers
1as first author
0since 2021 · last 2018
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-authorArtificial intelligence and machine learning · 1 · 1 first-authorSoftware engineering, systems software and programming languages · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Parallel and multicore computing · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › gene expression analysis
biclustering
0.312018
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data · Bioinform. 2018
Parallel and multicore computing › parallel computing
parallel implementation
0.112018
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data · Bioinform. 2018

Methods — techniques the papers use, named apart from their topics

parallelization · 0.7
YearPublicationVenuePosition
2018 runibic: a Bioconductor package for parallel row-based biclustering of gene expression data
abstract
Motivation: Biclustering is an unsupervised technique of simultaneous clustering of rows and columns of input matrix. With multiple biclustering algorithms proposed, UniBic remains one of the most accurate methods developed so far. Results: In this paper we introduce a Bioconductor package called runibic with parallel implementation of UniBic. For the convenience the algorithm was reimplemented, parallelized and wrapped within an R package called runibic. The package includes: (i) a couple of times faster parallel version of the original sequential algorithm, (ii) much more efficient memory management, (iii) modularity which allows to build new methods on top of the provided one and (iv) integration with the modern Bioconductor packages such as SummarizedExperiment, ExpressionSet and biclust. Availability and implementation: The package is implemented in R and is available from Bioconductor (starting from version 3.6) at the following URL http://bioconductor.org/packages/runibic with installation instructions and tutorial. Supplementary information: Supplementary data are available at Bioinformatics online.
Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore
Bioinform.2
2016 QtBiVis: a software toolbox for visual analysis of biclustering experiment
abstract
In this article we introduce QtBiVis -a novel software intended for the comparative analysis of biclustering results.This modular tool has been efficiently implemented in C++ with Qt framework GUI.It may be successfully used for coverage analysis of the results of biclustering as well filtering or sorting biclusters by Gene Ontology (GO) identifiers or bicluster enrichment values.It may also be useful for parameter studies of biclustering algorithms.In future releases we plan to add different modules for visualizing and comparing different GO terms and biclusters.
Artur Panszczyk, Patryk Orzechowski
FedCSIS1