Demo Data from EDBT 2026 / reviewers in the wild / expert
Artur Panszczyk
dblp:187/5906
· DBLP profile ↗
2ranked-venue papers
1as first author
0since 2021 · last 2018
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 2 · 1 first-authorArtificial intelligence and machine learning · 1 · 1 first-authorSoftware engineering, systems software and programming languages · 1 · 1 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% | |
| Computer architecture, parallel and distributed computing, and storage systems
1 paper |
Parallel and multicore computing · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › gene expression analysis
biclustering |
0.3 | 1 | 2018 | runibic: a Bioconductor package for parallel row-based biclustering of gene expression data · Bioinform. 2018 |
Parallel and multicore computing › parallel computing
parallel implementation |
0.1 | 1 | 2018 | runibic: a Bioconductor package for parallel row-based biclustering of gene expression data · Bioinform. 2018 |
Methods — techniques the papers use, named apart from their topics
parallelization · 0.7
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2018 | runibic: a Bioconductor package for parallel row-based biclustering of gene expression dataabstractMotivation: Biclustering is an unsupervised technique of simultaneous clustering of rows and columns of input matrix. With multiple biclustering algorithms proposed, UniBic remains one of the most accurate methods developed so far. Results: In this paper we introduce a Bioconductor package called runibic with parallel implementation of UniBic. For the convenience the algorithm was reimplemented, parallelized and wrapped within an R package called runibic. The package includes: (i) a couple of times faster parallel version of the original sequential algorithm, (ii) much more efficient memory management, (iii) modularity which allows to build new methods on top of the provided one and (iv) integration with the modern Bioconductor packages such as SummarizedExperiment, ExpressionSet and biclust. Availability and implementation: The package is implemented in R and is available from Bioconductor (starting from version 3.6) at the following URL http://bioconductor.org/packages/runibic with installation instructions and tutorial. Supplementary information: Supplementary data are available at Bioinformatics online. Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore |
Bioinform. | 2 |
| 2016 | QtBiVis: a software toolbox for visual analysis of biclustering experimentabstractIn this article we introduce QtBiVis -a novel software intended for the comparative analysis of biclustering results.This modular tool has been efficiently implemented in C++ with Qt framework GUI.It may be successfully used for coverage analysis of the results of biclustering as well filtering or sorting biclusters by Gene Ontology (GO) identifiers or bicluster enrichment values.It may also be useful for parameter studies of biclustering algorithms.In future releases we plan to add different modules for visualizing and comparing different GO terms and biclusters. Artur Panszczyk, Patryk Orzechowski |
FedCSIS | 1 |