Yongyi Shi

dblp:187/9469 · DBLP profile ↗
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8ranked-venue papers
4as first author
6since 2021 · last 2026
0000-0002-3751-9450ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 8 · 4 first-author · 6 since 2021
YearPublicationVenuePosition
2026 Privacy-Preserving Latent Diffusion-Based Synthetic Medical Image Generation
abstract
Deep learning methods have impacted almost every research field, demonstrating notable successes in medical imaging tasks such as denoising and super-resolution. However, the prerequisite for deep learning is data at scale, but data sharing is expensive yet at risk of privacy leakage. As cutting-edge AI generative models, diffusion models have now become dominant because of their rigorous foundation and unprecedented outcomes. Here we propose a latent diffusion approach for data synthesis without compromising patient privacy. In our exemplary case studies, we develop a latent diffusion model to generate medical CT, MRI, and PET images using publicly available datasets. We demonstrate that state-of-the-art deep learning-based denoising/super-resolution networks can be trained on our synthetic data to achieve image quality with no significant difference from what the same network can achieve after being trained on the original data. In our advanced diffusion model, we specifically embed a safeguard mechanism to protect patient privacy effectively and efficiently. Our approach enables privacy-preserving public sharing of diverse big datasets for development of deep models, potentially enabling federated learning at the level of input data instead of local network weights.
Yongyi Shi, Wenjun Xia, Chuang Niu, Christopher Wiedeman, Ge Wang 0001
IEEE Trans. Medical Imaging1
2025 Low-dose computed tomography perceptual image quality assessment
abstract
In computed tomography (CT) imaging, optimizing the balance between radiation dose and image quality is crucial due to the potentially harmful effects of radiation on patients. Although subjective assessments by radiologists are considered the gold standard in medical imaging, these evaluations can be time-consuming and costly. Thus, objective methods, such as the peak signal-to-noise ratio and structural similarity index measure, are often employed as alternatives. However, these metrics, initially developed for natural images, may not fully encapsulate the radiologists' assessment process. Consequently, interest in developing deep learning-based image quality assessment (IQA) methods that more closely align with radiologists' perceptions is growing. A significant barrier to this development has been the absence of open-source datasets and benchmark models specific to CT IQA. Addressing these challenges, we organized the Low-dose Computed Tomography Perceptual Image Quality Assessment Challenge in conjunction with the Medical Image Computing and Computer Assisted Intervention 2023. This event introduced the first open-source CT IQA dataset, consisting of 1,000 CT images of various quality, annotated with radiologists' assessment scores. As a benchmark, this challenge offers a comprehensive analysis of six submitted methods, providing valuable insight into their performance. This paper presents a summary of these methods and insights. This challenge underscores the potential for developing no-reference IQA methods that could exceed the capabilities of full-reference IQA methods, making a significant contribution to the research community with this novel dataset. The dataset is accessible at https://zenodo.org/records/7833096.
Wonkyeong Lee, Fabian Wagner, Adrian Galdran, Yongyi Shi, Wenjun Xia, Ge Wang 0001, Xuanqin Mou, Md. Atik Ahamed, Abdullah-Al-Zubaer Imran, Jieun Oh, Kyung Sang Kim, Jong Tak Baek, Dongheon Lee 0002, Boohwi Hong, Philip Tempelman, Donghang Lyu, Adrian Kuiper, Lars van Blokland, Maria Baldeon Calisto, Scott S. Hsieh, Minah Han, Jongduk Baek, Andreas K. Maier, Adam S. Wang, Garry Gold, Jang Hwan Choi 0001
Medical Image Anal.4
2024 Learned Tensor Neural Network Texture Prior for Photon-Counting CT Reconstruction
abstract
Photon-counting computed tomography (PCCT) reconstructs multiple energy-channel images to describe the same object, where there exists a strong correlation among different channel images. In addition, reconstruction of each channel image suffers photon count starving problem. To make full use of the correlation among different channel images to suppress the data noise and enhance the texture details in reconstructing each channel image, this paper proposes a tensor neural network (TNN) architecture to learn a multi-channel texture prior for PCCT reconstruction. Specifically, we first learn a spatial texture prior in each individual channel image by modeling the relationship between the center pixels and its corresponding neighbor pixels using a neural network. Then, we merge the single channel spatial texture prior into multi-channel neural network to learn the spectral local correlation information among different channel images. Since our proposed TNN is trained on a series of unpaired small spatial-spectral cubes which are extracted from one single reference multi-channel image, the local correlation in the spatial-spectral cubes is considered by TNN. To boost the TNN performance, a low-rank representation is also employed to consider the global correlation among different channel images. Finally, we integrate the learned TNN and the low-rank representation as priors into Bayesian reconstruction framework. To evaluate the performance of the proposed method, four references are considered. One is simulated images from ultra-high-resolution CT. One is spectral images from dual-energy CT. The other two are animal tissue and preclinical mouse images from a custom-made PCCT systems. Our TNN prior Bayesian reconstruction demonstrated better performance than other state-of-the-art competing algorithms, in terms of not only preserving texture feature but also suppressing image noise in each channel image.
Yongyi Shi, Xuanqin Mou, Zhengrong Liang
IEEE Trans. Medical Imaging1
2024 Blind CT Image Quality Assessment Using DDPM-Derived Content and Transformer-Based Evaluator
abstract
Lowering radiation dose per view and utilizing sparse views per scan are two common CT scan modes, albeit often leading to distorted images characterized by noise and streak artifacts. Blind image quality assessment (BIQA) strives to evaluate perceptual quality in alignment with what radiologists perceive, which plays an important role in advancing low-dose CT reconstruction techniques. An intriguing direction involves developing BIQA methods that mimic the operational characteristic of the human visual system (HVS). The internal generative mechanism (IGM) theory reveals that the HVS actively deduces primary content to enhance comprehension. In this study, we introduce an innovative BIQA metric that emulates the active inference process of IGM. Initially, an active inference module, implemented as a denoising diffusion probabilistic model (DDPM), is constructed to anticipate the primary content. Then, the dissimilarity map is derived by assessing the interrelation between the distorted image and its primary content. Subsequently, the distorted image and dissimilarity map are combined into a multi-channel image, which is inputted into a transformer-based image quality evaluator. By leveraging the DDPM-derived primary content, our approach achieves competitive performance on a low-dose CT dataset.
Yongyi Shi, Wenjun Xia, Ge Wang 0001, Xuanqin Mou
IEEE Trans. Medical Imaging1
2023 Machine Learned Texture Prior From Full-Dose CT Database via Multi-Modality Feature Selection for Bayesian Reconstruction of Low-Dose CT
Jiaxing Tan, Yongyi Shi, Hao Zhang 0026, Siming Lu, Michael Reiter, Zhengrong Liang
IEEE Trans. Medical Imaging3
2021 Deep Tomographic Image Reconstruction: Yesterday, Today, and Tomorrow - Editorial for the 2nd Special Issue "Machine Learning for Image Reconstruction"
Ge Wang 0001, Mathews Jacob, Xuanqin Mou, Yongyi Shi, Yonina C. Eldar
IEEE Trans. Medical Imaging4
2020 Spectral CT Reconstruction via Low-Rank Representation and Region-Specific Texture Preserving Markov Random Field Regularization
abstract
Photon-counting spectral computed tomography (CT) is capable of material characterization and can improve diagnostic performance over traditional clinical CT. However, it suffers from photon count starving for each individual energy channel which may cause severe artifacts in the reconstructed images. Furthermore, since the images in different energy channels describe the same object, there are high correlations among different channels. To make full use of the inter-channel correlations and minimize the count starving effect while maintaining clinically meaningful texture information, this paper combines a region-specific texture model with a low-rank correlation descriptor as an a priori regularization to explore a superior texture preserving Bayesian reconstruction of spectral CT. Specifically, the inter-channel correlations are characterized by the low-rank representation, and the inner-channel regional textures are modeled by a texture preserving Markov random field. In other words, this paper integrates the spectral and spatial information into a unified Bayesian reconstruction framework. The widely-used Split-Bregman algorithm is employed to minimize the objective function because of the non-differentiable property of the low-rank representation. To evaluate the tissue texture preserving performance of the proposed method for each channel, three references are built for comparison: one is the traditional CT image from energy integration detection. The second one is spectral images from dual-energy CT. The third one is individual channels images from custom-made photon-counting spectral CT. As expected, the proposed method produced promising results in terms of not only preserving texture features but also suppressing image noise in each channel, comparing to existing methods of total variation (TV), low-rank TV and tensor dictionary learning, by both visual inspection and quantitative indexes of root mean square error, peak signal to noise ratio, structural similarity and feature similarity.
Yongyi Shi, Junqi Sun, Xuanqin Mou, Zhengrong Liang
IEEE Trans. Medical Imaging1
2018 Low-Dose CT Image Denoising Using a Generative Adversarial Network With Wasserstein Distance and Perceptual Loss
abstract
The continuous development and extensive use of computed tomography (CT) in medical practice has raised a public concern over the associated radiation dose to the patient. Reducing the radiation dose may lead to increased noise and artifacts, which can adversely affect the radiologists' judgment and confidence. Hence, advanced image reconstruction from low-dose CT data is needed to improve the diagnostic performance, which is a challenging problem due to its ill-posed nature. Over the past years, various low-dose CT methods have produced impressive results. However, most of the algorithms developed for this application, including the recently popularized deep learning techniques, aim for minimizing the mean-squared error (MSE) between a denoised CT image and the ground truth under generic penalties. Although the peak signal-to-noise ratio is improved, MSE- or weighted-MSE-based methods can compromise the visibility of important structural details after aggressive denoising. This paper introduces a new CT image denoising method based on the generative adversarial network (GAN) with Wasserstein distance and perceptual similarity. The Wasserstein distance is a key concept of the optimal transport theory and promises to improve the performance of GAN. The perceptual loss suppresses noise by comparing the perceptual features of a denoised output against those of the ground truth in an established feature space, while the GAN focuses more on migrating the data noise distribution from strong to weak statistically. Therefore, our proposed method transfers our knowledge of visual perception to the image denoising task and is capable of not only reducing the image noise level but also trying to keep the critical information at the same time. Promising results have been obtained in our experiments with clinical CT images.
Qingsong Yang, Pingkun Yan, Hengyong Yu, Yongyi Shi, Xuanqin Mou, Mannudeep K. Kalra, Yi Zhang 0018, Ling Sun 0006, Ge Wang 0001
IEEE Trans. Medical Imaging5