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Athina Theodosiou

dblp:19/10933 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2012
0000-0003-4363-8162ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
sequence analysis
0.112012
LaTcOm: a web server for visualizing rare codon clusters in coding sequences · Bioinform. 2012
Bioinformatics and computational biology › molecular evolution
codon usage analysis
0.012012
LaTcOm: a web server for visualizing rare codon clusters in coding sequences · Bioinform. 2012

Methods — techniques the papers use, named apart from their topics

sliding window · 0.1linear-time algorithm · 0.1%minmax algorithm · 0.1
YearPublicationVenuePosition
2012 LaTcOm: a web server for visualizing rare codon clusters in coding sequences
abstract
UNLABELLED: We present LaTcOm, a new web tool, which offers several alternative methods for 'rare codon cluster' (RCC) identification from a single and simple graphical user interface. In the current version, three RCC detection schemes are implemented: the recently described %MinMax algorithm and a simplified sliding window approach, along with a novel modification of a linear-time algorithm for the detection of maximally scoring subsequences tailored to the RCC detection problem. Among a number of user tunable parameters, several codon-based scales relevant for RCC detection are available, including tRNA abundance values from Escherichia coli and several codon usage tables from a selection of genomes. Furthermore, useful scale transformations may be performed upon user request (e.g. linear, sigmoid). Users may choose to visualize RCC positions within the submitted sequences either with graphical representations or in textual form for further processing. AVAILABILITY: LaTcOm is freely available online at the URL http://troodos.biol.ucy.ac.cy/latcom.html.
Athina Theodosiou, Vasilis J. Promponas
Bioinform.1