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Stephen G. Gaffney

dblp:190/9892 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2016
0000-0002-5490-2945ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
cancer genomics		 0.212016
PathScore: a web tool for identifying altered pathways in cancer data · Bioinform. 2016
Bioinformatics and computational biology › functional genomics › functional enrichment analysis
pathway enrichment analysis		 0.212016
PathScore: a web tool for identifying altered pathways in cancer data · Bioinform. 2016
Bioinformatics and computational biology › cancer genomics
somatic mutation analysis		 0.112016
PathScore: a web tool for identifying altered pathways in cancer data · Bioinform. 2016

Methods — techniques the papers use, named apart from their topics

pathway enrichment scoring · 0.2
YearPublicationVenuePosition
2016 PathScore: a web tool for identifying altered pathways in cancer data
abstract
PathScore quantifies the level of enrichment of somatic mutations within curated pathways, applying a novel approach that identifies pathways enriched across patients. The application provides several user-friendly, interactive graphic interfaces for data exploration, including tools for comparing pathway effect sizes, significance, gene-set overlap and enrichment differences between projects. AVAILABILITY AND IMPLEMENTATION: Web application available at pathscore.publichealth.yale.edu. Site implemented in Python and MySQL, with all major browsers supported. Source code available at: github.com/sggaffney/pathscore with a GPLv3 license. CONTACT: [email protected].
Stephen G. Gaffney, Jeffrey P. Townsend
 Bioinform.1