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Nolan Hartwick

dblp:190/9925 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2016
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis › sequence assembly
genome assembly		 0.212016
plasmidSPAdes: assembling plasmids from whole genome sequencing data · Bioinform. 2016
Bioinformatics and computational biology › sequence analysis › sequence assembly
plasmid reconstruction		 0.212016
plasmidSPAdes: assembling plasmids from whole genome sequencing data · Bioinform. 2016

Methods — techniques the papers use, named apart from their topics

de bruijn graph assembly · 0.2
YearPublicationVenuePosition
2016 plasmidSPAdes: assembling plasmids from whole genome sequencing data
abstract
MOTIVATION: Plasmids are stably maintained extra-chromosomal genetic elements that replicate independently from the host cell's chromosomes. Although plasmids harbor biomedically important genes, (such as genes involved in virulence and antibiotics resistance), there is a shortage of specialized software tools for extracting and assembling plasmid data from whole genome sequencing projects. RESULTS: We present the plasmidSPAdes algorithm and software tool for assembling plasmids from whole genome sequencing data and benchmark its performance on a diverse set of bacterial genomes. AVAILABILITY AND IMPLEMENTATION: plasmidSPAdes is publicly available at http://spades.bioinf.spbau.ru/plasmidSPAdes/ CONTACT: [email protected] information: Supplementary data are available at Bioinformatics online.
Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
 Bioinform.2