We introduce the Wasserstein transform, a method for enhancing and denoising datasets defined on general metric spaces. The construction draws inspiration from Optimal Transportation ideas. We establish the stability of our method under data perturbation and, when the dataset is assumed to be Euclidean, we also exhibit a precise connection between the Wasserstein transform and the mean shift family of algorithms. We then use this connection to prove that mean shift also inherits stability under perturbations. We study the performance of the Wasserstein transform method on different datasets as a preprocessing step prior to clustering and classification tasks.

Estimating optimal phylogenetic trees or hierarchical clustering trees from metric data is an important problem in evolutionary biology and data analysis. Intuitively, the goodness-of-fit of a metric space to a tree depends on its inherent treeness, as well as other metric properties such as intrinsic dimension. Existing algorithms for embedding metric spaces into tree metrics provide distortion bounds depending on cardinality. Because cardinality is a simple property of any set, we argue that such bounds do not fully capture the rich structure endowed by the metric. We consider an embedding of a metric space into a tree proposed by Gromov. By proving a stability result, we obtain an improved additive distortion bound depending only on the hyperbolicity and doubling dimension of the metric. We observe that Gromov's method is dual to the well-known single linkage hierarchical clustering (SLHC) method. By means of this duality, we are able to transport our results to the setting of SLHC, where such additive distortion bounds were previously unknown.