Near surface temperature inversions are periods in which a low layer of warm air is trapped between cooler air higher up in the atmosphere and dense cooler air below it near the surface level. By causing cooler air to pool near the surface level, inversions can have detrimental effects for crop growers, including frost, increased moisture, and pesticide drift. As a result, predicting the occurrence and magnitude of these inversions yields substantial benefits for growers. We introduce a Long Short-Term Memory (LSTM) model for temperature inversion forecasting that is able to effectively predict localized, near surface temperature inversions in advance such that growers can take actions to mitigate the detrimental effects. We show a substantial performance gain over a deployed temperature inversion forecasting system, and include a series of ablations that show the benefit of using publicly available terrain-specific feature information when modeling inversions at this scale.

This paper introduces a novel approach to budgeted online active learning from finite-horizon data streams with extremely limited labeling budgets. In agricultural applications, such streams might include daily weather data over a growing season, and labels require costly measurements of weather-dependent plant characteristics. Our method integrates two key sources of prior information: a collection of preexisting expert predictors and episodic behavioral knowledge of the experts based on unlabeled data streams. Unlike previous research on online active learning with experts, our work simultaneously considers query budgets, finite horizons, and episodic knowledge, enabling effective learning in applications with severely limited labeling capacity. We demonstrate the utility of our approach through experiments on various prediction problems derived from both a realistic agricultural crop simulator and real-world data from multiple grape cultivars. The results show that our method significantly outperforms baseline expert predictions, uniform query selection, and existing approaches that consider budgets and limited horizons but neglect episodic knowledge, even under highly constrained labeling budgets.

Cold temperatures during fall and spring have the potential to cause frost damage to grapevines and other fruit plants, which can significantly decrease harvest yields. To help prevent these losses, farmers deploy expensive frost mitigation measures, such as, sprinklers, heaters, and wind machines, when they judge that damage may occur. This judgment, however, is challenging because the cold hardiness of plants changes throughout the dormancy period and it is difficult to directly measure. This has led scientists to develop cold hardiness prediction models that can be tuned to different grape cultivars based on laborious field measurement data. In this paper, we study whether deep-learning models can improve cold hardiness prediction for grapes based on data that has been collected over a 30-year time period. A key challenge is that the amount of data per cultivar is highly variable, with some cultivars having only a small amount. For this purpose, we investigate the use of multi-task learning to leverage data across cultivars in order to improve prediction performance for individual cultivars. We evaluate a number of multi-task learning approaches and show that the highest performing approach is able to significantly improve over learning for single cultivars and outperforms the current state-of-the-art scientific model for most cultivars.

Methods to efficiently uncover and extract community structures are required in a number of biological applications where networked data and their interactions can be modeled as graphs, and observing tightly-knit groups of vertices ("communities") can offer insights into the structural and functional building blocks of the underlying network. Classical applications of community detection have largely focused on unipartite networks - i.e., graphs built out of a single type of objects. However, due to increased availability of biological data from various sources, there is now an increasing need for handling heterogeneous networks which are built out of multiple types of objects. In this paper, we address the problem of identifying communities from biological bipartite networks - i.e., networks where interactions are observed between two different types of objects (e.g., genes and diseases, drugs and protein complexes, plants and pollinators, and hosts and pathogens). Toward detecting communities in such bipartite networks, we make the following contributions: i) (metric) we propose a variant of bipartite modularity; ii) (algorithms) we present an efficient algorithm called biLouvain that implements a set of heuristics toward fast and precise community detection in bipartite networks (https://github.com/paolapesantez/biLouvain); and iii) (experiments) we present a thorough experimental evaluation of our algorithm including comparison to other state-of-the-art methods to identify communities in bipartite networks. Experimental results show that our biLouvain algorithm identifies communities that have a comparable or better quality (as measured by bipartite modularity) than existing methods, while significantly reducing the time-to-solution between one and four orders of magnitude.