Peter Balogh

dblp:196/2852 · DBLP profile ↗
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2ranked-venue papers
0as first author
2since 2021 · last 2023
0000-0002-1503-4305ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 2 · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 44% Medical and health informatics · 44% Computational science and engineering · 13%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
GPUs and heterogeneous computing · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › systems bioinformatics
biological simulation
0.712023
Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts · SC 2023
Medical and health informatics › biomedical modeling
blood flow simulation
0.712023
Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts · SC 2023
GPUs and heterogeneous computing
CPU-GPU heterogeneous computing
0.712023
Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts · SC 2023
Computational science and engineering › multiphysics simulation
fluid-structure interaction
0.212023
Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts · SC 2023

Methods — techniques the papers use, named apart from their topics

hybrid CPU-GPU computation · 1.3adaptive physics refinement · 1.3
YearPublicationVenuePosition
2023 Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts
abstract
Simulations of cancer cell transport require accurately modeling mm-scale and longer trajectories through a circulatory system containing trillions of deformable red blood cells, whose intercellular interactions require submicron fidelity. Using a hybrid CPU-GPU approach, we extend the advanced physics refinement (APR) method to couple a finely-resolved region of explicitly-modeled red blood cells to a coarsely-resolved bulk fluid domain. We further develop algorithms that: capture the dynamics at the interface of differing viscosities, maintain hematocrit within the cell-filled volume, and move the finely-resolved region and encapsulated cells while tracking an individual cancer cell. Comparison to a fully-resolved fluid-structure interaction model is presented for verification. Finally, we use the advanced APR method to simulate cancer cell transport over a mm-scale distance while maintaining a local region of RBCs, using a fraction of the computational power required to run a fully-resolved model.
Sayan Roychowdhury, Samreen T. Mahmud, Aristotle X. Martin, Peter Balogh, Daniel F. Puleri, John Gounley, Erik W. Draeger, Amanda Randles
SC4
2022 High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory
abstract
The ability to track simulated cancer cells through the circulatory system, important for developing a mechanistic understanding of metastatic spread, pushes the limits of today's supercomputers by requiring the simulation of large fluid volumes at cellular-scale resolution. To overcome this challenge, we introduce a new adaptive physics refinement (APR) method that captures cellular-scale interaction across large domains and leverages a hybrid CPU-GPU approach to maximize performance. Through algorithmic advances that integrate multi-physics and multi-resolution models, we establish a finely resolved window with explicitly modeled cells coupled to a coarsely resolved bulk fluid domain. In this work we present multiple validations of the APR framework by comparing against fully resolved fluid-structure interaction methods and employ techniques, such as latency hiding and maximizing memory bandwidth, to effectively utilize heterogeneous node architectures. Collectively, these computational developments and performance optimizations provide a robust and scalable framework to enable system-level simulations of cancer cell transport.
Daniel F. Puleri, Sayan Roychowdhury, Peter Balogh, John Gounley, Erik W. Draeger, Jeff Ames, Adebayo Adebiyi, Simbarashe Chidyagwai, Benjamín Hernández, Seyong Lee, Shirley V. Moore, Jeffrey S. Vetter, Amanda Randles
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