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Olivier Armant

dblp:196/5307 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2025
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Environmental and earth informatics · 50% Bioinformatics and computational biology · 50%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Environmental and earth informatics
adverse outcome pathway
0.912025
AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multiple sources · Bioinform. 2025
Bioinformatics and computational biology
biomedical text mining
0.912025
AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multiple sources · Bioinform. 2025
Bioinformatics and computational biology › biomedical text mining
relation extraction
0.912025
AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multiple sources · Bioinform. 2025
Environmental and earth informatics
toxicology
0.912025
AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multiple sources · Bioinform. 2025

Methods — techniques the papers use, named apart from their topics

text mining · 0.9natural language processing · 0.9graph-based analysis · 0.9
YearPublicationVenuePosition
2025 AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multiple sources
abstract
MOTIVATION: The Adverse Outcome Pathways (AOP) framework advances alternative toxicology by prioritizing the mechanisms underlying toxic effects. It organizes existing knowledge in a structured way, tracing the progression from the initial perturbation of a molecular event, caused by various stressors, through key events across different biological levels, ultimately leading to adverse outcomes that affect human health and ecosystems. However, the increasing volume of toxicological data presents a significant challenge for integrating all available knowledge effectively. RESULTS: Text mining techniques, including natural language processing and graph-based approaches, provide powerful methods to analyze and integrate large, heterogeneous data sources. Within this framework, the AOP-helpFinder TM tool, accessible as a web server, was created to identify stressor-event and event-event relationships by automatically screening scientific literature in the PubMed database, facilitating the development of AOPs. The proposed new version introduces enhanced functionality by incorporating additional data sources, automatically annotating events from the literature with toxicological database information in a systems biology context. Users can now visualize results as interactive networks directly on the web server. With these advancements, AOP-helpFinder 3.0 offers a robust solution for integrative and predictive toxicology, as demonstrated in a case study exploring toxicological mechanisms associated with radon exposure. AVAILABILITY AND IMPLEMENTATION: AOP-helpFinder is available at https://aop-helpfinder-v3.u-paris-sciences.fr.
Thomas Jaylet, Florence Jornod, Quentin Capdet, Olivier Armant, Karine Audouze
Bioinform.4