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Renana Sabi

dblp:197/8196 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2017
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › molecular evolution
codon usage analysis
0.312017
stAIcalc: tRNA adaptation index calculator based on species-specific weights · Bioinform. 2017
Bioinformatics and computational biology
molecular evolution
0.312017
stAIcalc: tRNA adaptation index calculator based on species-specific weights · Bioinform. 2017
Bioinformatics and computational biology
translation efficiency
0.312017
stAIcalc: tRNA adaptation index calculator based on species-specific weights · Bioinform. 2017

Methods — techniques the papers use, named apart from their topics

species-specific weight optimization · 0.3
YearPublicationVenuePosition
2017 stAIcalc: tRNA adaptation index calculator based on species-specific weights
abstract
Summary: The tRNA Adaptation Index (tAI) is a tRNA-centric measure of translation efficiency which includes weights that take into account the efficiencies of the different wobble interactions. To enable the calculation of the index based on a species-specific inference of these weights, we created the stAI calc . The calculator includes optimized tAI weights for 100 species from the three domains of life along with a standalone software package that optimizes the weights for new organisms. The tAI with the optimized weights should enable performing large scale studies in disciplines such as molecular evolution, genomics, systems biology and synthetic biology. Availability and Implementation: The calculator is publicly available at http://www.cs.tau.ac.il/∼tamirtul/stAIcalc/stAIcalc.html. Contact: [email protected].
Renana Sabi, Renana Volvovitch Daniel, Tamir Tuller
Bioinform.1