Ultrasonography plays an essential role in breast cancer diagnosis. Current deep learning based studies train the models on either images or videos in a centralized learning manner, lacking consideration of joint benefits between two different modality models or the privacy issue of data centralization. In this study, we propose the first decentralized learning solution for joint learning with breast ultrasound video and image, called FedBCD. To enable the model to learn from images and videos simultaneously and seamlessly in client-level local training, we propose a Joint Ultrasound Video and Image Learning (JUVIL) model to bridge the dimension gap between video and image data by incorporating temporal and spatial adapters. The parameter-efficient design of JUVIL with trainable adapters and frozen backbone further reduces the computational cost and communication burden of federated learning, finally improving the overall efficiency. Moreover, considering conventional model-wise aggregation may lead to unstable federated training due to different modalities, data capacities in different clients, and different functionalities across layers. We further propose a Fisher information matrix (FIM) guided Layer-wise Aggregation method named FILA. By measuring layer-wise sensitivity with FIM, FILA assigns higher contributions to the clients with lower sensitivity, improving personalized performance during federated training. Extensive experiments on three image clients and one video client demonstrate the benefits of joint learning architecture, especially for the ones with small-scale data. FedBCD significantly outperforms nine federated learning methods on both video-based and image-based diagnoses, demonstrating the superiority and potential for clinical practice. Code is released at https://github.com/tianpeng-deng/FedBCD.

In this paper, we propose a Dual-path Supplemental Information Learning Architecture (DSILA) for predicting breast cancer Ki-67 status based on T2-weighted (T2w) magnetic resonance imaging (MRI). DSILA consists of two components: 1) a transfer network with multi-scale feature selection strategy to obtain generic multi-scale features most relative to target, 2) a supplemental learning network with a large receptive field and channel-level attention to mine scenario-related semantic information. A regulation item – Aspect Overlap Loss (AOL), is further added to force the supplemental learning network to pay more attention to the regions overlooked by the transfer network. The experimental results tested on the collected T2w MRI breast cancer Ki-67 dataset show that DSILA outperforms state-of-the-art techniques among all adopted evaluation metrics, even achieving 0.85 in Area under the Receiver Operating Characteristic Curve (AUC).

Brain tumor segmentation (BTS) in magnetic resonance image (MRI) is crucial for brain tumor diagnosis, cancer management and research purposes. With the great success of the ten-year BraTS challenges as well as the advances of CNN and Transformer algorithms, a lot of outstanding BTS models have been proposed to tackle the difficulties of BTS in different technical aspects. However, existing studies hardly consider how to fuse the multi-modality images in a reasonable manner. In this paper, we leverage the clinical knowledge of how radiologists diagnose brain tumors from multiple MRI modalities and propose a clinical knowledge-driven brain tumor segmentation model, called CKD-TransBTS. Instead of directly concatenating all the modalities, we re-organize the input modalities by separating them into two groups according to the imaging principle of MRI. A dual-branch hybrid encoder with the proposed modality-correlated cross-attention block (MCCA) is designed to extract the multi-modality image features. The proposed model inherits the strengths from both Transformer and CNN with the local feature representation ability for precise lesion boundaries and long-range feature extraction for 3D volumetric images. To bridge the gap between Transformer and CNN features, we propose a Trans&CNN Feature Calibration block (TCFC) in the decoder. We compare the proposed model with six CNN-based models and six transformer-based models on the BraTS 2021 challenge dataset. Extensive experiments demonstrate that the proposed model achieves state-of-the-art brain tumor segmentation performance compared with all the competitors.

Ultrasonography is an important routine examination for breast cancer diagnosis, due to its non-invasive, radiation-free and low-cost properties. However, the diagnostic accuracy of breast cancer is still limited due to its inherent limitations. Then, a precise diagnose using breast ultrasound (BUS) image would be significant useful. Many learning-based computer-aided diagnostic methods have been proposed to achieve breast cancer diagnosis/lesion classification. However, most of them require a pre-define region of interest (ROI) and then classify the lesion inside the ROI. Conventional classification backbones, such as VGG16 and ResNet50, can achieve promising classification results with no ROI requirement. But these models lack interpretability, thus restricting their use in clinical practice. In this study, we propose a novel ROI-free model for breast cancer diagnosis in ultrasound images with interpretable feature representations. We leverage the anatomical prior knowledge that malignant and benign tumors have different spatial relationships between different tissue layers, and propose a HoVer-Transformer to formulate this prior knowledge. The proposed HoVer-Trans block extracts the inter- and intra-layer spatial information horizontally and vertically. We conduct and release an open dataset GDPH&SYSUCC for breast cancer diagnosis in BUS. The proposed model is evaluated in three datasets by comparing with four CNN-based models and three vision transformer models via five-fold cross validation. It achieves state-of-the-art classification performance (GDPH&SYSUCC AUC: 0.924, ACC: 0.893, Spec: 0.836, Sens: 0.926) with the best model interpretability. In the meanwhile, our proposed model outperforms two senior sonographers on the breast cancer diagnosis when only one BUS image is given (GDPH&SYSUCC-AUC ours: 0.924 vs. reader1: 0.825 vs. reader2: 0.820).

Tissue-level semantic segmentation is a vital step in computational pathology. Fully-supervised models have already achieved outstanding performance with dense pixel-level annotations. However, drawing such labels on the giga-pixel whole slide images is extremely expensive and time-consuming. In this paper, we use only patch-level classification labels to achieve tissue semantic segmentation on histopathology images, finally reducing the annotation efforts. We propose a two-step model including a classification and a segmentation phases. In the classification phase, we propose a CAM-based model to generate pseudo masks by patch-level labels. In the segmentation phase, we achieve tissue semantic segmentation by our propose Multi-Layer Pseudo-Supervision. Several technical novelties have been proposed to reduce the information gap between pixel-level and patch-level annotations. As a part of this paper, we introduce a new weakly-supervised semantic segmentation (WSSS) dataset for lung adenocarcinoma (LUAD-HistoSeg). We conduct several experiments to evaluate our proposed model on two datasets. Our proposed model outperforms five state-of-the-art WSSS approaches. Note that we can achieve comparable quantitative and qualitative results with the fully-supervised model, with only around a 2% gap for MIoU and FwIoU. By comparing with manual labeling on a randomly sampled 100 patches dataset, patch-level labeling can greatly reduce the annotation time from hours to minutes. The source code and the released datasets are available at: https://github.com/ChuHan89/WSSS-Tissue.

Histopathological tissue classification is a simpler way to achieve semantic segmentation for the whole slide images, which can alleviate the requirement of pixel-level dense annotations. Existing works mostly leverage the popular CNN classification backbones in computer vision to achieve histopathological tissue classification. In this paper, we propose a super lightweight plug-and-play module, named Pyramidal Deep-Broad Learning (PDBL), for any well-trained classification backbone to improve the classification performance without a re-training burden. For each patch, we construct a multi-resolution image pyramid to obtain the pyramidal contextual information. For each level in the pyramid, we extract the multi-scale deep-broad features by our proposed Deep-Broad block (DB-block). We equip PDBL in three popular classification backbones, ShuffLeNetV2, EfficientNetb0, and ResNet50 to evaluate the effectiveness and efficiency of our proposed module on two datasets (Kather Multiclass Dataset and the LC25000 Dataset). Experimental results demonstrate the proposed PDBL can steadily improve the tissue-level classification performance for any CNN backbones, especially for the lightweight models when given a small among of training samples (less than 10%). It greatly saves the computational resources and annotation efforts. The source code is available at: https://github.com/linjiatai/PDBL.

Aiming to effective early detection of breast cancer, automatic tumor segmentation based on breast Magnetic Resonance Imaging (MRI) is concentrated by more and more researchers. This paper proposes a dense encoder-decoder network based on two-level context enhanced residual attention mechanism (TLCRAM-DED). With respect to TLCRAM-DED, we design the encoding structure combining two-level residual attention structure with dense block to extract and refine the features of different layers. Meanwhile, a dense multi-scale atrous convolution is used at the end of the encoder to obtain a larger receptive field and enrich the extracted semantic information. Moreover, residual attention structure (RAS) is also used for the refinement during decoding stage, while a long connection formed with the encoder RAS output is applied to supplement the features and to gradually recover the segmentation details. We validated prosed model in the DCE sequence of challenging breast cancer MRI dataset. The average Dice coefficient is up to 81.04%, which outperforms compared state-of-the-arts.

The conjugate gradient fast Fourier transform (CG-FFT) method to analyze electromagnetic scattering by buried flat metallic objects of arbitrary shape and large size is presented. Due to the use of FFT in the spatial domain and spectral domain to handle a spatial-domain convolution, the electric field integral equation and scattered fields can be rapidly solved without evaluations of Sommerfeld integrals. The accuracy of this algorithm is better than that of the conventional CG-FFT method, and the CPU time required for this algorithm is reduced to a minimum, while memory cost is order of N (the total cell number) and computational complexity is of order N log N in each iteration