We focus on the classification problem with a separable dataset, one of the most important and classical problems from machine learning. The standard approach to this task is logistic regression with gradient descent (LR+GD). Recent studies have observed that LR+GD can find a solution with arbitrarily large step sizes, defying conventional optimization theory. Our work investigates this phenomenon and makes three interconnected key observations about LR+GD with large step sizes. First, we find a remarkably simple explanation of why LR+GD with large step sizes solves the classification problem: LR+GD reduces to a batch version of the celebrated perceptron algorithm when the step size tends to infinity. Second, we observe that larger step sizes lead LR+GD to higher logistic losses when it tends to the perceptron algorithm, but larger step sizes also lead to faster convergence to a solution for the classification problem, meaning that logistic loss is an unreliable metric of the proximity to a solution. Surprisingly, high loss values can actually indicate faster convergence. Third, since the convergence rate in terms of loss function values of LR+GD is unreliable, we examine the iteration complexity required by LR+GD with large step sizes to solve the classification problem and prove that this complexity is suboptimal. To address this, we propose a new method, Normalized LR+GD – based on the connection between LR+GD and the perceptron algorithm – with much better theoretical guarantees.

In distributed stochastic optimization, where parallel and asynchronous methods are employed, we establish optimal time complexities under virtually any computation behavior of workers/devices/CPUs/GPUs, capturing potential disconnections due to hardware and network delays, time-varying computation powers, and any possible fluctuations and trends of computation speeds. These real-world scenarios are formalized by our new universal computation model. Leveraging this model and new proof techniques, we discover tight lower bounds that apply to virtually all synchronous and asynchronous methods, including Minibatch SGD, Asynchronous SGD (Recht et al., 2011), and Picky SGD (Cohen et al., 2021). We show that these lower bounds, up to constant factors, are matched by the optimal Rennala SGD and Malenia SGD methods (Tyurin & Richtárik, 2023).

Asynchronous Stochastic Gradient Descent (Asynchronous SGD) is a cornerstone method for parallelizing learning in distributed machine learning. However, its performance suffers under arbitrarily heterogeneous computation times across workers, leading to suboptimal time complexity and inefficiency as the number of workers scales. While several Asynchronous SGD variants have been proposed, recent findings by Tyurin & Richtárik (NeurIPS 2023) reveal that none achieve optimal time complexity, leaving a significant gap in the literature. In this paper, we propose Ringmaster ASGD, a novel Asynchronous SGD method designed to address these limitations and tame the inherent challenges of Asynchronous SGD. We establish, through rigorous theoretical analysis, that Ringmaster ASGD achieves optimal time complexity under arbitrarily heterogeneous and dynamically fluctuating worker computation times. This makes it the first Asynchronous SGD method to meet the theoretical lower bounds for time complexity in such scenarios.

We study the classical optimization problem $\min_{x \in \mathbb{R}^d} f(x)$ and analyze the gradient descent (GD) method in both nonconvex and convex settings. It is well-known that, under the $L$–smoothness assumption ($\|\| \nabla^2 f(x) \|\| \leq L$), the optimal point minimizing the quadratic upper bound $f(x_k) + ⟨\nabla f(x_k), x_{k+1} - x_k ⟩+ \frac{L}{2} \|\| x_{k+1} - x_k \|\|^2$ is $x_{k+1} = x_k - \gamma_k \nabla f(x_k)$ with step size $\gamma_k = \frac{1}{L}$. Surprisingly, a similar result can be derived under the $\ell$-generalized smoothness assumption ($\|\| \nabla^2 f(x) \|\| \leq \ell( \|\| \nabla f(x) \|\| )$). In this case, we derive the step size $\gamma_k = \int_{0}^{1} \frac{d v}{\ell( \|\| \nabla f(x_k) \|\| + \|\| \nabla f(x_k) \|\|{v})}.$ Using this step size rule, we improve upon existing theoretical convergence rates and obtain new results in several previously unexplored setups.

Effective communication between the server and workers plays a key role in distributed optimization. In this paper, we focus on optimizing communication, uncovering inefficiencies in prevalent downlink compression approaches. Considering first the pure setup where the uplink communication costs are negligible, we introduce MARINA-P, a novel method for downlink compression, employing a collection of correlated compressors. Theoretical analysis demonstrates that MARINA-P with permutation compressors can achieve a server-to-worker communication complexity improving with the number of workers, thus being provably superior to existing algorithms. We further show that MARINA-P can serve as a starting point for extensions such as methods supporting bidirectional compression: we introduce M3, a method combining MARINA-P with uplink compression and a momentum step, achieving bidirectional compression with provable improvements in total communication complexity as the number of workers increases. Theoretical findings align closely with empirical experiments, underscoring the efficiency of the proposed algorithms.

In practical distributed systems, workers are typically not homogeneous, and due to differences in hardware configurations and network conditions, can have highly varying processing times. We consider smooth nonconvex finite-sum (empirical risk minimization) problems in this setup and introduce a new parallel method, Freya PAGE, designed to handle arbitrarily heterogeneous and asynchronous computations. By being robust to "stragglers" and adaptively ignoring slow computations, Freya PAGE offers significantly improved time complexity guarantees compared to all previous methods, including Asynchronous SGD, Rennala SGD, SPIDER, and PAGE, while requiring weaker assumptions. The algorithm relies on novel generic stochastic gradient collection strategies with theoretical guarantees that can be of interest on their own, and may be used in the design of future optimization methods. Furthermore, we establish a lower bound for smooth nonconvex finite-sum problems in the asynchronous setup, providing a fundamental time complexity limit. This lower bound is tight and demonstrates the optimality of Freya PAGE in the large-scale regime, i.e., when $\sqrt{m} \geq n,$ where $n$ is \# of workers, and $m$ is \# of data samples.

We consider nonconvex stochastic optimization problems in the asynchronous centralized distributed setup where the communication times from workers to a server can not be ignored, and the computation and communication times are potentially different for all workers. Using an unbiassed compression technique, we develop a new method—Shadowheart SGD—that provably improves the time complexities of all previous centralized methods. Moreover, we show that the time complexity of Shadowheart SGD is optimal in the family of centralized methods with compressed communication. We also consider the bidirectional setup, where broadcasting from the server to the workers is non-negligible, and develop a corresponding method.

We consider the decentralized stochastic asynchronous optimization setup, where many workers asynchronously calculate stochastic gradients and asynchronously communicate with each other using edges in a multigraph. For both homogeneous and heterogeneous setups, we prove new time complexity lower bounds under the assumption that computation and communication speeds are bounded by constants. After that, we developed a new nearly optimal method, Fragile SGD, and a new optimal method, Amelie SGD, that converge with arbitrary heterogeneous computation and communication speeds and match our lower bounds (up to a logarithmic factor in the homogeneous setting). Our time complexities are new, nearly optimal, and provably improve all previous asynchronous/synchronous stochastic methods in the decentralized setup.

In this work we focus our attention on distributed optimization problems in the context where the communication time between the server and the workers is non-negligible. We obtain novel methods supporting bidirectional compression (both from the server to the workers and vice versa) that enjoy new state-of-the-art theoretical communication complexity for convex and nonconvex problems. Our bounds are the first that manage to decouple the variance/error coming from the workers-to-server and server-to-workers compression, transforming a multiplicative dependence to an additive one. Moreover, in the convex regime, we obtain the first bounds that match the theoretical communication complexity of gradient descent. Even in this convex regime, our algorithms work with biased gradient estimators, which is non-standard and requires new proof techniques that may be of independent interest. Finally, our theoretical results are corroborated through suitable experiments.

Due to the high communication overhead when training machine learning models in a distributed environment, modern algorithms invariably rely on lossy communication compression. However, when untreated, the errors caused by compression propagate, and can lead to severely unstable behavior, including exponential divergence. Almost a decade ago, Seide et al. [2014] proposed an error feedback (EF) mechanism, which we refer to as EF14, as an immensely effective heuristic for mitigating this issue. However, despite steady algorithmic and theoretical advances in the EF field in the last decade, our understanding is far from complete. In this work we address one of the most pressing issues. In particular, in the canonical nonconvex setting, all known variants of EF rely on very large batch sizes to converge, which can be prohibitive in practice. We propose a surprisingly simple fix which removes this issue both theoretically, and in practice: the application of Polyak's momentum to the latest incarnation of EF due to Richtárik et al. [2021] known as EF21. Our algorithm, for which we coin the name EF21-SGDM, improves the communication and sample complexities of previous error feedback algorithms under standard smoothness and bounded variance assumptions, and does not require any further strong assumptions such as bounded gradient dissimilarity. Moreover, we propose a double momentum version of our method that improves the complexities even further. Our proof seems to be novel even when compression is removed form the method, and as such, our proof technique is of independent interest in the study of nonconvex stochastic optimization enriched with Polyak's momentum.

We consider distributed convex optimization problems in the regime when the communication between the server and the workers is expensive in both uplink and downlink directions. We develop a new and provably accelerated method, which we call 2Direction, based on fast bidirectional compressed communication and a new bespoke error-feedback mechanism which may be of independent interest. Indeed, we find that the EF and EF21-P mechanisms (Seide et al., 2014; Gruntkowska et al., 2023) that have considerable success in the design of efficient non-accelerated methods are not appropriate for accelerated methods. In particular, we prove that 2Direction improves the previous state-of-the-art communication complexity $\widetilde{\Theta}\left(K \times \left(\frac{L}{\alpha \mu} + \frac{L_{\max} \omega}{n \mu} + \omega\right)\right)$ (Gruntkowska et al., 2023) to $\widetilde{\Theta}(K \times (\sqrt{\frac{L (\omega + 1)}{\alpha \mu}} + \sqrt{\frac{L_{\max} \omega^2}{n \mu}} + \frac{1}{\alpha} + \omega))$ in the $\mu$--strongly-convex setting, where $L$ and $L_{\max}$ are smoothness constants, $n$ is \# of workers, $\omega$ and $\alpha$ are compression errors of the Rand$K$ and Top$K$ sparsifiers (as examples), $K$ is \# of coordinates/bits that the server and workers send to each other. Moreover, our method is the first that improves upon the communication complexity of the vanilla accelerated gradient descent method (AGD). We obtain similar improvements in the general convex regime as well. Finally, our theoretical findings are corroborated by experimental evidence.

Parallelization is a popular strategy for improving the performance of methods. Optimization methods are no exception: design of efficient parallel optimization methods and tight analysis of their theoretical properties are important research endeavors. While the minimax complexities are well known for sequential optimization methods, the theory of parallel optimization methods is less explored. In this paper, we propose a new protocol that generalizes the classical oracle framework approach. Using this protocol, we establish minimax complexities for parallel optimization methods that have access to an unbiased stochastic gradient oracle with bounded variance. We consider a fixed computation model characterized by each worker requiring a fixed but worker-dependent time to calculate stochastic gradient. We prove lower bounds and develop optimal algorithms that attain them. Our results have surprising consequences for the literature of asynchronous optimization methods.

We present a new method that includes three key components of distributed optimization and federated learning: variance reduction of stochastic gradients, partial participation, and compressed communication. We prove that the new method has optimal oracle complexity and state-of-the-art communication complexity in the partial participation setting. Regardless of the communication compression feature, our method successfully combines variance reduction and partial participation: we get the optimal oracle complexity, never need the participation of all nodes, and do not require the bounded gradients (dissimilarity) assumption.

BACKGROUND: RNA-seq has become a standard technology to quantify mRNA. The measured values usually vary by several orders of magnitude, and while the detection of differences at high values is statistically well grounded, the significance of the differences for rare mRNAs can be weakened by the presence of biological and technical noise. RESULTS: We have developed a method for cleaning RNA-seq data, which improves the detection of differentially expressed genes and specifically genes with low to moderate transcription. Using a data modeling approach, parameters of randomly distributed mRNA counts are identified and reads, most probably originating from technical noise, are removed. We demonstrate that the removal of this random component leads to the significant increase in the number of detected differentially expressed genes, more significant pvalues and no bias towards low-count genes. CONCLUSION: Application of RNAdeNoise to our RNA-seq data on polysome profiling and several published RNA-seq datasets reveals its suitability for different organisms and sequencing technologies such as Illumina and BGI, shows improved detection of differentially expressed genes, and excludes the subjective setting of thresholds for minimal RNA counts. The program, RNA-seq data, resulted gene lists and examples of use are in the supplementary data and at https://github.com/Deyneko/RNAdeNoise .