Demo Data from EDBT 2026 / reviewers in the wild / expert
Emmanuel Klinger
dblp:205/9263
· DBLP profile ↗
1ranked-venue papers
1as first author
0since 2021 · last 2018
—ORCID · unresolved
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
likelihood-free inference |
0.3 | 1 | 2018 | pyABC: distributed, likelihood-free inference · Bioinform. 2018 |
Bioinformatics and computational biology
systems biology |
0.3 | 1 | 2018 | pyABC: distributed, likelihood-free inference · Bioinform. 2018 |
Methods — techniques the papers use, named apart from their topics
sequential monte carlo · 0.3parallelization · 0.3approximate bayesian computation · 0.3
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2018 | pyABC: distributed, likelihood-free inferenceabstractSummary: Likelihood-free methods are often required for inference in systems biology. While approximate Bayesian computation (ABC) provides a theoretical solution, its practical application has often been challenging due to its high computational demands. To scale likelihood-free inference to computationally demanding stochastic models, we developed pyABC: a distributed and scalable ABC-Sequential Monte Carlo (ABC-SMC) framework. It implements a scalable, runtime-minimizing parallelization strategy for multi-core and distributed environments scaling to thousands of cores. The framework is accessible to non-expert users and also enables advanced users to experiment with and to custom implement many options of ABC-SMC schemes, such as acceptance threshold schedules, transition kernels and distance functions without alteration of pyABC's source code. pyABC includes a web interface to visualize ongoing and finished ABC-SMC runs and exposes an API for data querying and post-processing. Availability and Implementation: pyABC is written in Python 3 and is released under a 3-clause BSD license. The source code is hosted on https://github.com/icb-dcm/pyabc and the documentation on http://pyabc.readthedocs.io. It can be installed from the Python Package Index (PyPI). Supplementary information: Supplementary data are available at Bioinformatics online. Emmanuel Klinger, Dennis Rickert, Jan Hasenauer |
Bioinform. | 1 |