Deepak Alapatt

dblp:209/6532 · DBLP profile ↗
← Back
7ranked-venue papers
1as first author
7since 2021 · last 2024
0000-0001-6223-3270ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 7 · 1 first-author · 7 since 2021Graphics, computer vision, multimedia, augmented reality and games · 2 · 1 first-author · 2 since 2021
YearPublicationVenuePosition
2024 Jumpstarting Surgical Computer Vision
Deepak Alapatt, Aditya Murali, Vinkle Srivastav, Pietro Mascagni, Nicolas Padoy
MICCAI (6)1
2024 Latent Graph Representations for Critical View of Safety Assessment
abstract
Assessing the critical view of safety in laparoscopic cholecystectomy requires accurate identification and localization of key anatomical structures, reasoning about their geometric relationships to one another, and determining the quality of their exposure. Prior works have approached this task by including semantic segmentation as an intermediate step, using predicted segmentation masks to then predict the CVS. While these methods are effective, they rely on extremely expensive ground-truth segmentation annotations and tend to fail when the predicted segmentation is incorrect, limiting generalization. In this work, we propose a method for CVS prediction wherein we first represent a surgical image using a disentangled latent scene graph, then process this representation using a graph neural network. Our graph representations explicitly encode semantic information - object location, class information, geometric relations - to improve anatomy-driven reasoning, as well as visual features to retain differentiability and thereby provide robustness to semantic errors. Finally, to address annotation cost, we propose to train our method using only bounding box annotations, incorporating an auxiliary image reconstruction objective to learn fine-grained object boundaries. We show that our method not only outperforms several baseline methods when trained with bounding box annotations, but also scales effectively when trained with segmentation masks, maintaining state-of-the-art performance.
Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Nicolas Padoy
IEEE Trans. Medical Imaging2
2023 Encoding Surgical Videos as Latent Spatiotemporal Graphs for Object and Anatomy-Driven Reasoning
Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Nicolas Padoy
MICCAI (9)2
2023 CholecTriplet2021: A benchmark challenge for surgical action triplet recognition
Chinedu Innocent Nwoye, Deepak Alapatt, Tong Yu 0009, Armine Vardazaryan, Fangfang Xia, Tong Xia, Fucang Jia, Yuxuan Yang 0007, Hao Wang 0081, Derong Yu, Guoyan Zheng, Xiaotian Duan, Neil Getty, Ricardo Sanchez-Matilla, Maria Robu, Li Zhang 0040, Huabin Chen, Jiacheng Wang 0002, Liansheng Wang 0002, Beerend G. A. Gerats, Sista Raviteja, Rachana Sathish, Rong Tao, Satoshi Kondo, Winnie Pang, Hongliang Ren 0001, Julian Ronald Abbing, Mohammad Hasan Sarhan, Sebastian Bodenstedt, Nithya Bhasker, Bruno Oliveira 0002, Helena R. Torres, Finn Gaida, Tobias Czempiel, João L. Vilaça, Pedro Morais, Jaime C. Fonseca 0001, Ruby Mae Egging, Inge Nicole Wijma, Chen Qian 0006, Guibin Bian, Zhen Li 0026, Velmurugan Balasubramanian, Debdoot Sheet, Imanol Luengo, Yuanbo Zhu, Shuai Ding 0001, Jakob-Anton Aschenbrenner, Nicolas Elini van der Kar, Mengya Xu, Mobarakol Islam, Seenivasan Lalithkumar, Alexander Jenke, Danail Stoyanov, Didier Mutter, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Nicolas Padoy
Medical Image Anal.2
2023 CholecTriplet2022: Show me a tool and tell me the triplet - An endoscopic vision challenge for surgical action triplet detection
Chinedu Innocent Nwoye, Tong Yu 0009, Saurav Sharma, Aditya Murali, Deepak Alapatt, Armine Vardazaryan, Kun Yuan 0004, Jonas Hajek, Wolfgang Reiter, Amine Yamlahi, Finn-Henri Smidt, Xiaoyang Zou, Guoyan Zheng, Bruno Oliveira 0002, Helena R. Torres, Satoshi Kondo, Satoshi Kasai, Felix Holm, Ege Özsoy, Shuangchun Gui, Sista Raviteja, Rachana Sathish, Pranav Poudel, Binod Bhattarai, Ziheng Wang 0003, Guo Rui, Melanie Schellenberg, João L. Vilaça, Tobias Czempiel, Zhenkun Wang 0001, Debdoot Sheet, Shrawan Kumar Thapa, Max Berniker, Patrick Godau, Pedro Morais, Sudarshan Regmi, Thuy Nuong Tran, Jaime C. Fonseca 0001, Jan-Hinrich Nölke, Estevão Lima, Eduard Vazquez, Lena Maier-Hein, Nassir Navab, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Didier Mutter, Nicolas Padoy
Medical Image Anal.5
2023 Dissecting self-supervised learning methods for surgical computer vision
abstract
The field of surgical computer vision has undergone considerable breakthroughs in recent years with the rising popularity of deep neural network-based methods. However, standard fully-supervised approaches for training such models require vast amounts of annotated data, imposing a prohibitively high cost; especially in the clinical domain. Self-Supervised Learning (SSL) methods, which have begun to gain traction in the general computer vision community, represent a potential solution to these annotation costs, allowing to learn useful representations from only unlabeled data. Still, the effectiveness of SSL methods in more complex and impactful domains, such as medicine and surgery, remains limited and unexplored. In this work, we address this critical need by investigating four state-of-the-art SSL methods (MoCo v2, SimCLR, DINO, SwAV) in the context of surgical computer vision. We present an extensive analysis of the performance of these methods on the Cholec80 dataset for two fundamental and popular tasks in surgical context understanding, phase recognition and tool presence detection. We examine their parameterization, then their behavior with respect to training data quantities in semi-supervised settings. Correct transfer of these methods to surgery, as described and conducted in this work, leads to substantial performance gains over generic uses of SSL - up to 7.4% on phase recognition and 20% on tool presence detection - as well as state-of-the-art semi-supervised phase recognition approaches by up to 14%. Further results obtained on a highly diverse selection of surgical datasets exhibit strong generalization properties. The code is available at https://github.com/CAMMA-public/SelfSupSurg.
Sanat Ramesh, Vinkle Srivastav, Deepak Alapatt, Tong Yu 0009, Aditya Murali, Luca Sestini, Chinedu Innocent Nwoye, Idris Hamoud, Saurav Sharma, Antoine Fleurentin, Georgios Exarchakis, Alexandros Karargyris, Nicolas Padoy
Medical Image Anal.3
2023 Federated Cycling (FedCy): Semi-Supervised Federated Learning of Surgical Phases
abstract
Recent advancements in deep learning methods bring computer-assistance a step closer to fulfilling promises of safer surgical procedures. However, the generalizability of such methods is often dependent on training on diverse datasets from multiple medical institutions, which is a restrictive requirement considering the sensitive nature of medical data. Recently proposed collaborative learning methods such as Federated Learning (FL) allow for training on remote datasets without the need to explicitly share data. Even so, data annotation still represents a bottleneck, particularly in medicine and surgery where clinical expertise is often required. With these constraints in mind, we propose FedCy, a federated semi-supervised learning (FSSL) method that combines FL and self-supervised learning to exploit a decentralized dataset of both labeled and unlabeled videos, thereby improving performance on the task of surgical phase recognition. By leveraging temporal patterns in the labeled data, FedCy helps guide unsupervised training on unlabeled data towards learning task-specific features for phase recognition. We demonstrate significant performance gains over state-of-the-art FSSL methods on the task of automatic recognition of surgical phases using a newly collected multi-institutional dataset of laparoscopic cholecystectomy videos. Furthermore, we demonstrate that our approach also learns more generalizable features when tested on data from an unseen domain.
Hasan Kassem, Deepak Alapatt, Pietro Mascagni, Alexandros Karargyris, Nicolas Padoy
IEEE Trans. Medical Imaging2