Demonstration venue · read-only. Every page can be browsed; the buttons that would change it are switched off. Create an account to run TaxoReview on your own data.

Erzsébet Fichó

dblp:209/7694 · DBLP profile ↗
← Back
2ranked-venue papers
1as first author
0since 2021 · last 2018
0000-0002-3965-8438ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein analysis
protein-protein interaction
0.312018
DIBS: a repository of disordered binding sites mediating interactions with ordered proteins · Bioinform. 2018
Bioinformatics and computational biology › biological database
protein interaction database
0.312017
MFIB: a repository of protein complexes with mutual folding induced by binding · Bioinform. 2017
Bioinformatics and computational biology
protein structure analysis
0.312017
MFIB: a repository of protein complexes with mutual folding induced by binding · Bioinform. 2017
Bioinformatics and computational biology
structural bioinformatics
0.112018
DIBS: a repository of disordered binding sites mediating interactions with ordered proteins · Bioinform. 2018

Methods — techniques the papers use, named apart from their topics

manual curation · 0.3database construction · 0.3hierarchical classification · 0.3
YearPublicationVenuePosition
2018 DIBS: a repository of disordered binding sites mediating interactions with ordered proteins
abstract
Motivation: Intrinsically Disordered Proteins (IDPs) mediate crucial protein-protein interactions, most notably in signaling and regulation. As their importance is increasingly recognized, the detailed analyses of specific IDP interactions opened up new opportunities for therapeutic targeting. Yet, large scale information about IDP-mediated interactions in structural and functional details are lacking, hindering the understanding of the mechanisms underlying this distinct binding mode. Results: Here, we present DIBS, the first comprehensive, curated collection of complexes between IDPs and ordered proteins. DIBS not only describes by far the highest number of cases, it also provides the dissociation constants of their interactions, as well as the description of potential post-translational modifications modulating the binding strength and linear motifs involved in the binding. Together with the wide range of structural and functional annotations, DIBS will provide the cornerstone for structural and functional studies of IDP complexes. Availability and implementation: DIBS is freely accessible at http://dibs.enzim.ttk.mta.hu/. The DIBS application is hosted by Apache web server and was implemented in PHP. To enrich querying features and to enhance backend performance a MySQL database was also created. Contact: [email protected] or [email protected]. Supplementary information: Supplementary data are available at Bioinformatics online.
Éva Schád, Erzsébet Fichó, Rita Pancsa, István Simon, Zsuzsanna Dosztányi, Bálint Mészáros
Bioinform.2
2017 MFIB: a repository of protein complexes with mutual folding induced by binding
abstract
MOTIVATION: It is commonplace that intrinsically disordered proteins (IDPs) are involved in crucial interactions in the living cell. However, the study of protein complexes formed exclusively by IDPs is hindered by the lack of data and such analyses remain sporadic. Systematic studies benefited other types of protein-protein interactions paving a way from basic science to therapeutics; yet these efforts require reliable datasets that are currently lacking for synergistically folding complexes of IDPs. RESULTS: Here we present the Mutual Folding Induced by Binding (MFIB) database, the first systematic collection of complexes formed exclusively by IDPs. MFIB contains an order of magnitude more data than any dataset used in corresponding studies and offers a wide coverage of known IDP complexes in terms of flexibility, oligomeric composition and protein function from all domains of life. The included complexes are grouped using a hierarchical classification and are complemented with structural and functional annotations. MFIB is backed by a firm development team and infrastructure, and together with possible future community collaboration it will provide the cornerstone for structural and functional studies of IDP complexes. AVAILABILITY AND IMPLEMENTATION: MFIB is freely accessible at http://mfib.enzim.ttk.mta.hu/. The MFIB application is hosted by Apache web server and was implemented in PHP. To enrich querying features and to enhance backend performance a MySQL database was also created. CONTACT: [email protected], [email protected]. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Erzsébet Fichó, István Reményi, István Simon, Bálint Mészáros
Bioinform.1