Hannah Eyre

dblp:209/8442 · DBLP profile ↗
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10ranked-venue papers
4as first author
7since 2021 · last 2023
—ORCID · unresolved

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Applied, interdisciplinary, general and emerging computing · 8 · 4 first-author · 7 since 2021Systems, architecture and hardware · 2
YearPublicationVenuePosition
2023 A deep learning approach for medication disposition and corresponding attributes extraction
abstract
OBJECTIVE: This article summarizes our approach to extracting medication and corresponding attributes from clinical notes, which is the focus of track 1 of the 2022 National Natural Language Processing (NLP) Clinical Challenges(n2c2) shared task. METHODS: The dataset was prepared using Contextualized Medication Event Dataset (CMED), including 500 notes from 296 patients. Our system consisted of three components: medication named entity recognition (NER), event classification (EC), and context classification (CC). These three components were built using transformer models with slightly different architecture and input text engineering. A zero-shot learning solution for CC was also explored. RESULTS: Our best performance systems achieved micro-average F1 scores of 0.973, 0.911, and 0.909 for the NER, EC, and CC, respectively. CONCLUSION: In this study, we implemented a deep learning-based NLP system and demonstrated that our approach of (1) utilizing special tokens helps our model to distinguish multiple medications mentions in the same context; (2) aggregating multiple events of a single medication into multiple labels improves our model's performance.
Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi
J. Biomed. Informatics4
2022 From Rules to Machine Learning: Upgrading Aging Clinical NLP Systems
Hannah Eyre, Scott L. DuVall, Olga V. Patterson
AMIA1
2022 Identifying Menopausal Status with Natural Language Processing
Hannah Eyre, Kristine W. Lynch, Carolyn Gibson, Scott L. DuVall, Olga V. Patterson
AMIA1
2022 Comprehensive Mapping of Presenting Symptoms in the Emergency Department and Inpatient Setting
Christopher R. Wilson, Annie E. Bowles, Hannah Eyre, Scott L. DuVall, Olga V. Patterson
AMIA3
2021 Challenges of comprehensive automatic coding of presenting complaints
Annie E. Bowles, Hannah Eyre, Scott L. DuVall, Olga V. Patterson
AMIA2
2021 Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
AMIA1
2021 From Emergency Department to Admission: mapping reasons for visit and admit diagnosis using Natural Language Processing
Olga V. Patterson, Hannah Eyre, Kelly S. Peterson, Scott L. DuVall
AMIA2
2020 Removing barriers to clinical text processing with MedSpaCy
Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall
AMIA1
2018 Student Cluster Competition 2017, Team University of Utah: Reproducing Vectorization of the Tersoff Multi-Body Potential on the Intel Broadwell and Intel Skylake Platforms
Janaan Lake, Qixiang Chao, Hannah Eyre, Emerson Ford, Kevin Parker, Kincaid Savoie
Parallel Comput.3
2017 Reproducing ParConnect for SC16
Marek S. Baranowski, Braden Caywood, Hannah Eyre, Janaan Lake, Kevin Parker, Kincaid Savoie, Hari Sundar, Mary W. Hall
Parallel Comput.3