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Rui Ponte Costa

dblp:210/2512 · DBLP profile ↗
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9ranked-venue papers
2as first author
6since 2021 · last 2025
0000-0003-2595-2027ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 8 · 2 first-author · 5 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
7 papers
Deep learning architectures and training · 53% Representation and self-supervised learning · 16% Learning theory · 16%
Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 11 heaviest of 14, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
computational neuroscience
1.422025
Brain-Like Processing Pathways Form in Models With Heterogeneous Experts · NeurIPS 2025
Cortico-cerebellar networks as decoupling neural interfaces · NeurIPS 2021
Machine learning › Reinforcement learning › multi-agent reinforcement learning
credit assignment
1.122022
Single-phase deep learning in cortico-cortical networks · NeurIPS 2022
Cortico-cerebellar networks as decoupling neural interfaces · NeurIPS 2021
Machine learning › Representation and self-supervised learning › representation learning
disentangled representation learning
1.122022
Lost in Latent Space: Examining failures of disentangled models at combinatorial generalisation · NeurIPS 2022
The role of Disentanglement in Generalisation · ICLR 2021
Machine learning › Deep learning architectures and training
biologically plausible learning
0.922022
Single-phase deep learning in cortico-cortical networks · NeurIPS 2022
Dendritic cortical microcircuits approximate the backpropagation algorithm · NeurIPS 2018
Machine learning › Deep learning architectures and training
mixture of experts
0.912025
Brain-Like Processing Pathways Form in Models With Heterogeneous Experts · NeurIPS 2025
Machine learning › Deep learning architectures and training
backpropagation
0.612022
Single-phase deep learning in cortico-cortical networks · NeurIPS 2022
Machine learning › Learning theory › generalization
combinatorial generalization
0.612022
Lost in Latent Space: Examining failures of disentangled models at combinatorial generalisation · NeurIPS 2022
Machine learning › Deep learning architectures and training › neural network training › local learning
decoupled neural interfaces
0.512021
Cortico-cerebellar networks as decoupling neural interfaces · NeurIPS 2021
Machine learning › Learning theory
generalization
0.512021
The role of Disentanglement in Generalisation · ICLR 2021
Machine learning › Deep learning architectures and training › recurrent neural network
gated recurrent network
0.312017
Cortical microcircuits as gated-recurrent neural networks · NIPS 2017
Machine learning › Deep learning architectures and training
recurrent neural network
0.312017
Cortical microcircuits as gated-recurrent neural networks · NIPS 2017

Methods — techniques the papers use, named apart from their topics

routing cost · 1.7mixture of experts · 1.7inductive biases · 1.7expert dropout · 1.7short-term plasticity · 0.6latent space analysis · 0.6encoder-decoder evaluation · 0.6dendrite-targeting interneurons · 0.6bursting activity · 0.6representation learning · 0.5recurrent neural network · 0.5decoupled neural interface · 0.5
YearPublicationVenuePosition
2025 Brain-Like Processing Pathways Form in Models With Heterogeneous Experts
abstract
The brain is made up of a vast set of heterogeneous regions that dynamically organize into pathways as a function of task demands. Examples of such pathways can be found in the interactions between cortical and subcortical networks during learning, or in sub-networks specializing for task characteristics such as difficulty or modality. Despite the large role these pathways play in cognition, the mechanisms through which brain regions organize into pathways remain unclear. In this work, we use an extension of the Heterogeneous Mixture-of-Experts architecture to show that heterogeneous regions do not form processing pathways by themselves, implying that the brain likely implements specific constraints which result in the reliable formation of pathways. We identify three biologically relevant inductive biases that encourage pathway formation: a routing cost imposed on the use of more complex regions, a scaling factor that reduces this cost when task performance is low, and randomized expert dropout. When comparing our resulting Mixture-of-Pathways model with the brain, we observe that the artificial pathways in our model match how the brain uses cortical and subcortical systems to learn and solve tasks of varying difficulty. In summary, we introduce a novel framework for investigating how the brain forms task-specific pathways through inductive biases, and the effects these biases have on the behavior of Mixture-of-Experts models.
Jack Cook, Danyal Akarca, Rui Ponte Costa, Jascha Achterberg
NeurIPS3
2022 Single-phase deep learning in cortico-cortical networks
abstract
The error-backpropagation (backprop) algorithm remains the most common solution to the credit assignment problem in artificial neural networks. In neuroscience, it is unclear whether the brain could adopt a similar strategy to correctly modify its synapses. Recent models have attempted to bridge this gap while being consistent with a range of experimental observations. However, these models are either unable to effectively backpropagate error signals across multiple layers or require a multi-phase learning process, neither of which are reminiscent of learning in the brain. Here, we introduce a new model, Bursting Cortico-Cortical Networks (BurstCCN), which solves these issues by integrating known properties of cortical networks namely bursting activity, short-term plasticity (STP) and dendrite-targeting interneurons. BurstCCN relies on burst multiplexing via connection-type-specific STP to propagate backprop-like error signals within deep cortical networks. These error signals are encoded at distal dendrites and induce burst-dependent plasticity as a result of excitatory-inhibitory top-down inputs. First, we demonstrate that our model can effectively backpropagate errors through multiple layers using a single-phase learning process. Next, we show both empirically and analytically that learning in our model approximates backprop-derived gradients. Finally, we demonstrate that our model is capable of learning complex image classification tasks (MNIST and CIFAR-10). Overall, our results suggest that cortical features across sub-cellular, cellular, microcircuit and systems levels jointly underlie single-phase efficient deep learning in the brain.
Will Greedy, Heng Wei Zhu, Joseph Pemberton, Jack Mellor, Rui Ponte Costa
NeurIPS5
2022 Lost in Latent Space: Examining failures of disentangled models at combinatorial generalisation
abstract
Recent research has shown that generative models with highly disentangled representations fail to generalise to unseen combination of generative factor values. These findings contradict earlier research which showed improved performance in out-of-training distribution settings when compared to entangled representations. Additionally, it is not clear if the reported failures are due to (a) encoders failing to map novel combinations to the proper regions of the latent space, or (b) novel combinations being mapped correctly but the decoder is unable to render the correct output for the unseen combinations. We investigate these alternatives by testing several models on a range of datasets and training settings. We find that (i) when models fail, their encoders also fail to map unseen combinations to correct regions of the latent space and (ii) when models succeed, it is either because the test conditions do not exclude enough examples, or because excluded cases involve combinations of object properties with it's shape. We argue that to generalise properly, models not only need to capture factors of variation, but also understand how to invert the process that causes the visual stimulus.
Milton Llera Montero, Jeffrey S. Bowers, Rui Ponte Costa, Casimir J. H. Ludwig, Gaurav Malhotra
NeurIPS3
2022 Pre- and postsynaptically expressed spike-timing-dependent plasticity contribute differentially to neuronal learning
abstract
A plethora of experimental studies have shown that long-term synaptic plasticity can be expressed pre- or postsynaptically depending on a range of factors such as developmental stage, synapse type, and activity patterns. The functional consequences of this diversity are not clear, although it is understood that whereas postsynaptic expression of plasticity predominantly affects synaptic response amplitude, presynaptic expression alters both synaptic response amplitude and short-term dynamics. In most models of neuronal learning, long-term synaptic plasticity is implemented as changes in connective weights. The consideration of long-term plasticity as a fixed change in amplitude corresponds more closely to post- than to presynaptic expression, which means theoretical outcomes based on this choice of implementation may have a postsynaptic bias. To explore the functional implications of the diversity of expression of long-term synaptic plasticity, we adapted a model of long-term plasticity, more specifically spike-timing-dependent plasticity (STDP), such that it was expressed either independently pre- or postsynaptically, or in a mixture of both ways. We compared pair-based standard STDP models and a biologically tuned triplet STDP model, and investigated the outcomes in a minimal setting, using two different learning schemes: in the first, inputs were triggered at different latencies, and in the second a subset of inputs were temporally correlated. We found that presynaptic changes adjusted the speed of learning, while postsynaptic expression was more efficient at regulating spike timing and frequency. When combining both expression loci, postsynaptic changes amplified the response range, while presynaptic plasticity allowed control over postsynaptic firing rates, potentially providing a form of activity homeostasis. Our findings highlight how the seemingly innocuous choice of implementing synaptic plasticity by single weight modification may unwittingly introduce a postsynaptic bias in modelling outcomes. We conclude that pre- and postsynaptically expressed plasticity are not interchangeable, but enable complimentary functions.
Beatriz Eymi Pimentel Mizusaki, Sally Si Ying Li, Rui Ponte Costa, Jesper Sjöström
PLoS Comput. Biol.3
2021 The role of Disentanglement in Generalisation
Milton Llera Montero, Casimir J. H. Ludwig, Rui Ponte Costa, Gaurav Malhotra, Jeffrey S. Bowers
ICLR3
2021 Cortico-cerebellar networks as decoupling neural interfaces
abstract
The brain solves the credit assignment problem remarkably well. For credit to be assigned across neural networks they must, in principle, wait for specific neural computations to finish. How the brain deals with this inherent locking problem has remained unclear. Deep learning methods suffer from similar locking constraints both on the forward and feedback phase. Recently, decoupled neural interfaces (DNIs) were introduced as a solution to the forward and feedback locking problems in deep networks.Here we propose that a specialised brain region, the cerebellum, helps the cerebral cortex solve similar locking problems akin to DNIs. To demonstrate the potential of this framework we introduce a systems-level model in which a recurrent cortical network receives online temporal feedback predictions from a cerebellar module. We test this cortico-cerebellar recurrent neural network (ccRNN) model on a number of sensorimotor (line and digit drawing) and cognitive tasks (pattern recognition and caption generation) that have been shown to be cerebellar-dependent. In all tasks, we observe that ccRNNs facilitates learning while reducing ataxia-like behaviours, consistent with classical experimental observations. Moreover, our model also explains recent behavioural and neuronal observations while making several testable predictions across multiple levels.Overall, our work offers a novel perspective on the cerebellum as a brain-wide decoupling machine for efficient credit assignment and opens a new avenue between deep learning and neuroscience.
Joseph Pemberton, Ellen Boven, Richard Apps, Rui Ponte Costa
NeurIPS4
2018 Dendritic cortical microcircuits approximate the backpropagation algorithm
abstract
Deep learning has seen remarkable developments over the last years, many of them inspired by neuroscience. However, the main learning mechanism behind these advances – error backpropagation – appears to be at odds with neurobiology. Here, we introduce a multilayer neuronal network model with simplified dendritic compartments in which error-driven synaptic plasticity adapts the network towards a global desired output. In contrast to previous work our model does not require separate phases and synaptic learning is driven by local dendritic prediction errors continuously in time. Such errors originate at apical dendrites and occur due to a mismatch between predictive input from lateral interneurons and activity from actual top-down feedback. Through the use of simple dendritic compartments and different cell-types our model can represent both error and normal activity within a pyramidal neuron. We demonstrate the learning capabilities of the model in regression and classification tasks, and show analytically that it approximates the error backpropagation algorithm. Moreover, our framework is consistent with recent observations of learning between brain areas and the architecture of cortical microcircuits. Overall, we introduce a novel view of learning on dendritic cortical circuits and on how the brain may solve the long-standing synaptic credit assignment problem.
João Sacramento, Rui Ponte Costa, Yoshua Bengio, Walter Senn
NeurIPS2
2017 Cortical microcircuits as gated-recurrent neural networks
abstract
Cortical circuits exhibit intricate recurrent architectures that are remarkably similar across different brain areas. Such stereotyped structure suggests the existence of common computational principles. However, such principles have remained largely elusive. Inspired by gated-memory networks, namely long short-term memory networks (LSTMs), we introduce a recurrent neural network in which information is gated through inhibitory cells that are subtractive (subLSTM). We propose a natural mapping of subLSTMs onto known canonical excitatory-inhibitory cortical microcircuits. Our empirical evaluation across sequential image classification and language modelling tasks shows that subLSTM units can achieve similar performance to LSTM units. These results suggest that cortical circuits can be optimised to solve complex contextual problems and proposes a novel view on their computational function. Overall our work provides a step towards unifying recurrent networks as used in machine learning with their biological counterparts.
Rui Ponte Costa, Yannis M. Assael, Brendan Shillingford, Nando de Freitas, Tim P. Vogels
NIPS1
2008 Epileptic Seizure Classification Using Neural Networks with 14 Features
Rui Ponte Costa, Pedro Oliveira 0008, Guilherme Silva Rodrigues, Bruno Direito, António Dourado
KES (2)1