Demo Data from EDBT 2026 / reviewers in the wild / expert
Tyler A. Joseph
dblp:217/7759
· DBLP profile ↗
3ranked-venue papers
3as first author
0since 2021 · last 2020
0000-0001-6013-7285ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 3 · 3 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
2 papers |
Bioinformatics and computational biology · 100% |
Topics — the 4 heaviest of 4, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
metagenomics |
0.4 | 1 | 2020 | Efficient and Accurate Inference of Microbial Trajectories from Longitudinal Count Data · RECOMB 2020 |
Bioinformatics and computational biology › population genetics
ancestry inference |
0.3 | 1 | 2018 | Inference of Population Structure from Ancient DNA · RECOMB 2018 |
Bioinformatics and computational biology › population genetics
ancient DNA |
0.3 | 1 | 2018 | Inference of Population Structure from Ancient DNA · RECOMB 2018 |
Bioinformatics and computational biology
population genetics |
0.3 | 1 | 2018 | Inference of Population Structure from Ancient DNA · RECOMB 2018 |
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2020 | Efficient and Accurate Inference of Microbial Trajectories from Longitudinal Count Data
Tyler A. Joseph, Amey P. Pasarkar, Itsik Pe'er |
RECOMB | 1 |
| 2020 | Compositional Lotka-Volterra describes microbial dynamics in the simplexabstractDynamic changes in microbial communities play an important role in human health and disease. Specifically, deciphering how microbial species in a community interact with each other and their environment can elucidate mechanisms of disease, a problem typically investigated using tools from community ecology. Yet, such methods require measurements of absolute densities, whereas typical datasets only provide estimates of relative abundances. Here, we systematically investigate models of microbial dynamics in the simplex of relative abundances. We derive a new nonlinear dynamical system for microbial dynamics, termed "compositional" Lotka-Volterra (cLV), unifying approaches using generalized Lotka-Volterra (gLV) equations from community ecology and compositional data analysis. On three real datasets, we demonstrate that cLV recapitulates interactions between relative abundances implied by gLV. Moreover, we show that cLV is as accurate as gLV in forecasting microbial trajectories in terms of relative abundances. We further compare cLV to two other models of relative abundance dynamics motivated by common assumptions in the literature-a linear model in a log-ratio transformed space, and a linear model in the space of relative abundances-and provide evidence that cLV more accurately describes community trajectories over time. Finally, we investigate when information about direct effects can be recovered from relative data that naively provide information about only indirect effects. Our results suggest that strong effects may be recoverable from relative data, but more subtle effects are challenging to identify. Tyler A. Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe'er |
PLoS Comput. Biol. | 1 |
| 2018 | Inference of Population Structure from Ancient DNA
Tyler A. Joseph, Itsik Pe'er |
RECOMB | 1 |