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Nilanjan Chatterjee

dblp:219/1619 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2018
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › statistical genetics
genetic association study
0.312018
Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies · Bioinform. 2018
Bioinformatics and computational biology
power analysis
0.312018
Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies · Bioinform. 2018
Bioinformatics and computational biology › statistical genetics › rare variant analysis
rare variant association testing
0.312018
Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies · Bioinform. 2018
Bioinformatics and computational biology
statistical genetics
0.312018
Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies · Bioinform. 2018

Methods — techniques the papers use, named apart from their topics

simulation study · 0.3analytic approximation · 0.3
YearPublicationVenuePosition
2018 Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies
abstract
Motivation: Genome-wide association studies are now shifting focus from analysis of common to rare variants. As power for association testing for individual rare variants may often be low, various aggregate level association tests have been proposed to detect genetic loci. Typically, power calculations for such tests require specification of large number of parameters, including effect sizes and allele frequencies of individual variants, making them difficult to use in practice. We propose to approximate power to a varying degree of accuracy using a smaller number of key parameters, including the total genetic variance explained by multiple variants within a locus. Results: We perform extensive simulation studies to assess the accuracy of the proposed approximations in realistic settings. Using these simplified power calculations, we develop an analytic framework to obtain bounds on genetic architecture of an underlying trait given results from genome-wide association studies with rare variants. Finally, we provide insights into the required quality of annotation/functional information for identification of likely causal variants to make meaningful improvement in power. Availability and implementation: A shiny application that allows a variety of Power Analysis of GEnetic AssociatioN Tests (PAGEANT), in R is made publicly available at https://andrewhaoyu.shinyapps.io/PAGEANT/. Contact: [email protected]. Supplementary information: Supplementary data are available at Bioinformatics online.
Andriy Derkach, Nilanjan Chatterjee
Bioinform.3