EDBT 2026 Demo / reviewers in the wild / expert
Shawn Gu
dblp:220/3143
· DBLP profile ↗
3ranked-venue papers
2as first author
3since 2021 · last 2023
0000-0002-4523-1262ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 3 · 2 first-author · 3 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 3 heaviest of 4, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › network bioinformatics › biological network analysis
network analysis |
0.6 | 1 | 2022 | Modeling multi-scale data via a network of networks · Bioinform. 2022 |
Bioinformatics and computational biology › protein function prediction
network-based function prediction |
0.6 | 1 | 2022 | Modeling multi-scale data via a network of networks · Bioinform. 2022 |
Bioinformatics and computational biology
protein function prediction |
0.6 | 1 | 2022 | Modeling multi-scale data via a network of networks · Bioinform. 2022 |
Methods — techniques the papers use, named apart from their topics
node label prediction · 0.6graph label prediction · 0.6
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2023 | Analysis of Moral Judgment on RedditabstractMoral outrage has become synonymous with social media in recent years. However, the preponderance of academic analysis on social media websites has focused on hate speech and misinformation. This article focuses on analyzing moral judgments rendered on social media by capturing the moral judgments that are passed in the subreddit /r/AmITheAsshole on Reddit. Using the labels associated with each judgment, we train a classifier that can take a comment and determine whether it judges the user who made the original post to have positive or negative moral valence. Then, we employ human annotators to verify the performance of this classifier and use it to investigate an assortment of website traits surrounding moral judgments in ten other subreddits. Our analysis looks to answer three questions related to moral judgments and how these apply to different aspects of Reddit. We seek to determine whether moral valence impacts post scores, in which subreddit communities contain users with more negative moral valence, and whether gender and age play a role in moral judgments. Findings from our experiments show that users upvote posts more often when posts contain positive moral valence. We also find that certain subreddits, such as /r/confessions, attract users who tend to be judged more negatively. Finally, we found that men and older age were judged negatively more often. Nicholas Botzer, Shawn Gu, Tim Weninger |
IEEE Trans. Comput. Soc. Syst. | 2 |
| 2022 | Modeling multi-scale data via a network of networksabstractMOTIVATION: Prediction of node and graph labels are prominent network science tasks. Data analyzed in these tasks are sometimes related: entities represented by nodes in a higher-level (higher scale) network can themselves be modeled as networks at a lower level. We argue that systems involving such entities should be integrated with a 'network of networks' (NoNs) representation. Then, we ask whether entity label prediction using multi-level NoN data via our proposed approaches is more accurate than using each of single-level node and graph data alone, i.e. than traditional node label prediction on the higher-level network and graph label prediction on the lower-level networks. To obtain data, we develop the first synthetic NoN generator and construct a real biological NoN. We evaluate accuracy of considered approaches when predicting artificial labels from the synthetic NoNs and proteins' functions from the biological NoN. RESULTS: For the synthetic NoNs, our NoN approaches outperform or are as good as node- and network-level ones depending on the NoN properties. For the biological NoN, our NoN approaches outperform the single-level approaches for just under half of the protein functions, and for 30% of the functions, only our NoN approaches make meaningful predictions, while node- and network-level ones achieve random accuracy. So, NoN-based data integration is important. AVAILABILITY AND IMPLEMENTATION: The software and data are available at https://nd.edu/~cone/NoNs. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Shawn Gu, Meng Jiang 0001, Pietro H. Guzzi, Tijana Milenkovic |
Bioinform. | 1 |
| 2021 | Data-driven biological network alignment that uses topological, sequence, and functional informationabstractBACKGROUND: Network alignment (NA) can transfer functional knowledge between species' conserved biological network regions. Traditional NA assumes that it is topological similarity (isomorphic-like matching) between network regions that corresponds to the regions' functional relatedness. However, we recently found that functionally unrelated proteins are as topologically similar as functionally related proteins. So, we redefined NA as a data-driven method called TARA, which learns from network and protein functional data what kind of topological relatedness (rather than similarity) between proteins corresponds to their functional relatedness. TARA used topological information (within each network) but not sequence information (between proteins across networks). Yet, TARA yielded higher protein functional prediction accuracy than existing NA methods, even those that used both topological and sequence information. RESULTS: Here, we propose TARA++ that is also data-driven, like TARA and unlike other existing methods, but that uses across-network sequence information on top of within-network topological information, unlike TARA. To deal with the within-and-across-network analysis, we adapt social network embedding to the problem of biological NA. TARA++ outperforms protein functional prediction accuracy of existing methods. CONCLUSIONS: As such, combining research knowledge from different domains is promising. Overall, improvements in protein functional prediction have biomedical implications, for example allowing researchers to better understand how cancer progresses or how humans age. Shawn Gu, Tijana Milenkovic |
BMC Bioinform. | 1 |