Semantic role labeling (SRL) is dedicated to recognizing the semantic predicate-argument structure of a sentence. Previous studies in terms of traditional models have shown syntactic information can make remarkable contributions to SRL performance; however, the necessity of syntactic information was challenged by a few recent neural SRL studies that demonstrate impressive performance without syntactic backbones and suggest that syntax information becomes much less important for neural semantic role labeling, especially when paired with recent deep neural network and large-scale pre-trained language models. Despite this notion, the neural SRL field still lacks a systematic and full investigation on the relevance of syntactic information in SRL, for both dependency and both monolingual and multilingual settings. This paper intends to quantify the importance of syntactic information for neural SRL in the deep learning framework. We introduce three typical SRL frameworks (baselines), sequence-based, tree-based, and graph-based, which are accompanied by two categories of exploiting syntactic information: syntax pruning-based and syntax feature-based. Experiments are conducted on the CoNLL-2005, -2009, and -2012 benchmarks for all languages available, and results show that neural SRL models can still benefit from syntactic information under certain conditions. Furthermore, we show the quantitative significance of syntax to neural SRL models together with a thorough empirical survey using existing models.

Semantic role labeling (SRL) is to recognize the predicate-argument structure of a sentence, including subtasks of predicate disambiguation and argument labeling. Previous studies usually formulate the entire SRL problem into two or more subtasks. For the first time, this paper introduces an end-to-end neural model which unifiedly tackles the predicate disambiguation and the argument labeling in one shot. Using a biaffine scorer, our model directly predicts all semantic role labels for all given word pairs in the sentence without relying on any syntactic parse information. Specifically, we augment the BiLSTM encoder with a non-linear transformation to further distinguish the predicate and the argument in a given sentence, and model the semantic role labeling process as a word pair classification task by employing the biaffine attentional mechanism. Though the proposed model is syntax-agnostic with local decoder, it outperforms the state-of-the-art syntax-aware SRL systems on the CoNLL-2008, 2009 benchmarks for both English and Chinese. To our best knowledge, we report the first syntax-agnostic SRL model that surpasses all known syntax-aware models.

This paper presents a sequence to sequence (seq2seq) dependency parser by directly predicting the relative position of head for each given word, which therefore results in a truly end-to-end seq2seq dependency parser for the first time. Enjoying the advantage of seq2seq modeling, we enrich a series of embedding enhancement, including firstly introduced subword and node2vec augmentation. Meanwhile, we propose a beam search decoder with tree constraint and subroot decomposition over the sequence to furthermore enhance our seq2seq parser. Our parser is evaluated on benchmark treebanks, being on par with the state-of-the-art parsers by achieving 94.11% UAS on PTB and 88.78% UAS on CTB, respectively.

Semantic role labeling (SRL) aims to recognize the predicate-argument structure of a sentence.Syntactic information has been paid a great attention over the role of enhancing SRL.However, the latest advance shows that syntax would not be so important for SRL with the emerging much smaller gap between syntax-aware and syntax-agnostic SRL.To comprehensively explore the role of syntax for SRL task, we extend existing models and propose a unified framework to investigate more effective and more diverse ways of incorporating syntax into sequential neural networks.Exploring the effect of syntactic input quality on SRL performance, we confirm that high-quality syntactic parse could still effectively enhance syntactically-driven SRL.Using empirically optimized integration strategy, we even enlarge the gap between syntax-aware and syntax-agnostic SRL.Our framework achieves state-of-the-art results on CoNLL-2009 benchmarks both for English and Chinese, substantially outperforming all previous models.

The subcellular localization of microRNAs (miR-NAs) is closely related with their biological functions. Some recent studies have discovered that microRNAs can target to various cellular compartments, and have abundant localization patterns in cells. However, to the best of our knowledge, there has been no computational tool for predicting miRNA subcellular locations to date. The major reason is that the lack of useful information source largely limits the prediction performance using traditional statistical learning approaches. In this study, we regard this prediction task as a Sequence-to-Sequence learning process and propose an attention-based encoder-decoder model, miRLocator, to identify subcellular locations of human miRNAs. The designed miRLocator uses a bidirectional long short-term memory (BiLSTM) module to encode the input sequences, and an LSTM module to decode these context vectors as location sets. Especially, a new encoding method for RNAs, RNA2Vec, and an entropy-based method are incorporated in the model to determine the input and output representations, respectively. The experimental results show that miRLocator achieves promising prediction accuracy with the limited input information, and outperforms the models using hand-designed features and conventional RNN models.