Bibhas Chakraborty

dblp:225/2875 · DBLP profile ↗
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14ranked-venue papers
0as first author
13since 2021 · last 2025
0000-0002-7366-0478ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 12 · 11 since 2021Artificial intelligence and machine learning · 2 · 2 since 2021
YearPublicationVenuePosition
2025 Skew-probabilistic neural networks for learning from imbalanced data
Shraddha M. Naik, Tanujit Chakraborty, Madhurima Panja, Abdenour Hadid, Bibhas Chakraborty
Pattern Recognit.5
2023 Handling missing values in healthcare data: A systematic review of deep learning-based imputation techniques
Mingxuan Liu 0005, Siqi Li 0004, Marcus Eng Hock Ong, Yilin Ning, Feng Xie 0004, Seyed Ehsan Saffari, Yuqing Shang, Victor Volovici, Bibhas Chakraborty, Nan Liu 0003
Artif. Intell. Medicine10
2023 Federated and distributed learning applications for electronic health records and structured medical data: a scoping review
abstract
OBJECTIVES: Federated learning (FL) has gained popularity in clinical research in recent years to facilitate privacy-preserving collaboration. Structured data, one of the most prevalent forms of clinical data, has experienced significant growth in volume concurrently, notably with the widespread adoption of electronic health records in clinical practice. This review examines FL applications on structured medical data, identifies contemporary limitations, and discusses potential innovations. MATERIALS AND METHODS: We searched 5 databases, SCOPUS, MEDLINE, Web of Science, Embase, and CINAHL, to identify articles that applied FL to structured medical data and reported results following the PRISMA guidelines. Each selected publication was evaluated from 3 primary perspectives, including data quality, modeling strategies, and FL frameworks. RESULTS: Out of the 1193 papers screened, 34 met the inclusion criteria, with each article consisting of one or more studies that used FL to handle structured clinical/medical data. Of these, 24 utilized data acquired from electronic health records, with clinical predictions and association studies being the most common clinical research tasks that FL was applied to. Only one article exclusively explored the vertical FL setting, while the remaining 33 explored the horizontal FL setting, with only 14 discussing comparisons between single-site (local) and FL (global) analysis. CONCLUSIONS: The existing FL applications on structured medical data lack sufficient evaluations of clinically meaningful benefits, particularly when compared to single-site analyses. Therefore, it is crucial for future FL applications to prioritize clinical motivations and develop designs and methodologies that can effectively support and aid clinical practice and research.
Siqi Li 0004, Pinyan Liu, Gustavo G. Nascimento, Fabio Renato Manzolli Leite, Bibhas Chakraborty, Chuan Hong, Yilin Ning, Feng Xie 0004, Zhen Ling Teo, Daniel S. W. Ting, Hamed Haddadi 0001, Marcus Eng Hock Ong, Marco Aurélio Peres, Nan Liu 0003
J. Am. Medical Informatics Assoc.6
2023 FedScore: A privacy-preserving framework for federated scoring system development
Siqi Li 0004, Yilin Ning, Marcus Eng Hock Ong, Bibhas Chakraborty, Chuan Hong, Feng Xie 0004, Mingxuan Liu 0005, Daniel M. Buckland, Yong Chen 0016, Nan Liu 0003
J. Biomed. Informatics4
2022 A Novel Interpretable Machine Learning System to Generate Clinical Risk Scores: An Application for Predicting Early Mortality or Unplanned Readmission in A Retrospective Cohort Study
Yilin Ning, Siqi Li 0004, Marcus Eng Hock Ong, Feng Xie 0004, Bibhas Chakraborty, Daniel S. W. Ting, Nan Liu 0003
AMIA5
2022 AutoScore-Ordinal: An Interpretable Machine Learning Framework for Generating Scoring Models for Ordinal Outcomes
Seyed Ehsan Saffari, Yilin Ning, Feng Xie 0004, Bibhas Chakraborty, Victor Volovici, Roger Vaughan, Marcus Eng Hock Ong, Nan Liu 0003
AMIA4
2022 Benchmarking Emergency Department Triage Prediction Models with Machine Learning and Large Public Electronic Health Records
Feng Xie 0004, Jun Zhou 0014, Jin Wee Lee, Mingrui Tan, Siqi Li 0004, Logasan S/O Rajnthern, Marcel Lucas Chee, Bibhas Chakraborty, An-Kwok Ian Wong, Alon Dagan, Marcus Eng Hock Ong, Nan Liu 0003
AMIA8
2022 Estimating the optimal linear combination of predictors using spherically constrained optimization
abstract
In the context of a binary classification problem, the optimal linear combination of continuous predictors can be estimated by maximizing an empirical estimate of the area under the receiver operating characteristic (ROC) curve (AUC). For multi-category responses, the optimal predictor combination can similarly be obtained by maximization of the empirical hypervolume under the manifold (HUM). This problem is particularly relevant to medical research, where it may be of interest to diagnose a disease with various subtypes or predict a multi-category outcome. Since the empirical HUM is discontinuous, non-differentiable, and possibly multi-modal, solving this maximization problem requires a global optimization technique. Estimation of the optimal coefficient vector using existing global optimization techniques is computationally expensive, becoming prohibitive as the number of predictors and the number of outcome categories increases. We propose an efficient derivative-free black-box optimization technique based on pattern search to solve this problem. Through extensive simulation studies, we demonstrate that the proposed method achieves better performance compared to existing methods including the step-down algorithm. Finally, we illustrate the proposed method to predict swallowing difficulty after radiation therapy for oropharyngeal cancer based on radiation dose to various structures in the head and neck.
Priyam Das, Debsurya De, Raju Maiti, Mona Kamal, Katherine A. Hutcheson, Clifton D. Fuller, Bibhas Chakraborty, Christine B. Peterson
BMC Bioinform.7
2022 AutoScore-Survival: Developing interpretable machine learning-based time-to-event scores with right-censored survival data
Feng Xie 0004, Yilin Ning, Benjamin Goldstein 0001, Marcus Eng Hock Ong, Nan Liu 0003, Bibhas Chakraborty
J. Biomed. Informatics7
2022 Deep learning for temporal data representation in electronic health records: A systematic review of challenges and methodologies
Feng Xie 0004, Yilin Ning, Marcus Eng Hock Ong, Mengling Feng, Wynne Hsu, Bibhas Chakraborty, Nan Liu 0003
J. Biomed. Informatics7
2022 AutoScore-Imbalance: An interpretable machine learning tool for development of clinical scores with rare events data
Feng Xie 0004, Marcus Eng Hock Ong, Yilin Ning, Marcel Lucas Chee, Seyed Ehsan Saffari, Hairil Rizal Abdullah, Benjamin Goldstein 0001, Bibhas Chakraborty, Nan Liu 0003
J. Biomed. Informatics9
2021 Development and Validation of a Survival Score for the Emergency Department in Singapore
Feng Xie 0004, Bibhas Chakraborty, Nan Liu 0003, Marcus Eng Hock Ong
AMIA2
2021 Adaptive learning algorithms to optimize mobile applications for behavioral health: guidelines for design decisions
abstract
OBJECTIVE: Providing behavioral health interventions via smartphones allows these interventions to be adapted to the changing behavior, preferences, and needs of individuals. This can be achieved through reinforcement learning (RL), a sub-area of machine learning. However, many challenges could affect the effectiveness of these algorithms in the real world. We provide guidelines for decision-making. MATERIALS AND METHODS: Using thematic analysis, we describe challenges, considerations, and solutions for algorithm design decisions in a collaboration between health services researchers, clinicians, and data scientists. We use the design process of an RL algorithm for a mobile health study "DIAMANTE" for increasing physical activity in underserved patients with diabetes and depression. Over the 1.5-year project, we kept track of the research process using collaborative cloud Google Documents, Whatsapp messenger, and video teleconferencing. We discussed, categorized, and coded critical challenges. We grouped challenges to create thematic topic process domains. RESULTS: Nine challenges emerged, which we divided into 3 major themes: 1. Choosing the model for decision-making, including appropriate contextual and reward variables; 2. Data handling/collection, such as how to deal with missing or incorrect data in real-time; 3. Weighing the algorithm performance vs effectiveness/implementation in real-world settings. CONCLUSION: The creation of effective behavioral health interventions does not depend only on final algorithm performance. Many decisions in the real world are necessary to formulate the design of problem parameters to which an algorithm is applied. Researchers must document and evaulate these considerations and decisions before and during the intervention period, to increase transparency, accountability, and reproducibility. TRIAL REGISTRATION: clinicaltrials.gov, NCT03490253.
Caroline A. Figueroa, Adrián Aguilera, Bibhas Chakraborty, Arghavan Modiri, Jai Aggarwal, Nina Deliu, Urmimala Sarkar, Joseph Jay Williams, Courtney R. Lyles
J. Am. Medical Informatics Assoc.3
2020 Challenges and opportunities of using reinforcement learning to optimize behavioral health interventions delivered via smartphones
Caroline A. Figueroa, Adrián Aguilera, Bibhas Chakraborty, Arghavan Modiri, Jai Aggarwal, Nina Deliu, Urmimala Sarkar, Joseph Jay Williams, Courtney R. Lyles
AMIA3