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Yoshua Wakeham

dblp:226/4873 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2018
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 1 heaviest of 1, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › gene expression analysis › gene expression data mining
gene expression data exploration
0.312018
Building online genomics applications using BioPyramid · Bioinform. 2018

Methods — techniques the papers use, named apart from their topics

python pyramid framework · 0.3
YearPublicationVenuePosition
2018 Building online genomics applications using BioPyramid
abstract
Summary: BioPyramid is a Python package, which serves as a scaffold for building an online application for the exploration of gene expression data. It is designed for bioinformaticians wishing to quickly share transformed data and interactive analyses with collaborators. Current R-based tools similarly address the need to quickly share 'omics'-data in an exploratory format, but these are generally small-scale, single-dataset solutions. Biopyramid is written in Python pyramid framework and scalable to address longer-term or more complex projects. It contains a number of components designed to reduce the time and effort in building such an application from scratch, including gene annotation, dataset models and visualization tools. Availability and implementation: Freely available at http://github.com/jarny/biopyramid. Implemented in python and javascript.
Liam Stephenson, Yoshua Wakeham, Nick Seidenman, Jarny Choi
Bioinform.2