Tiarnan D. Keenan

dblp:230/4276 · also Tiarnan D. L. Keenan · DBLP profile ↗
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9ranked-venue papers
0as first author
7since 2021 · last 2026
0000-0002-2253-1772ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 8 · 6 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021
YearPublicationVenuePosition
2026 LMOD\(\boldsymbol{+}\): A Comprehensive Multimodal Dataset and Benchmark for Developing and Evaluating Multimodal Large Language Models in Ophthalmology
abstract
The rising prevalence of vision-threatening eye diseases poses a major global health and economic burden, yet timely diagnosis remains limited by workforce shortages, diagnostic delays, and restricted access to specialized care. Artificial intelligence (AI) offers potential solutions. In particular, recent progress in foundation models and large language models-especially multimodal large language models (MLLMs)-has shown promise in medical image interpretation and automated clinical documentation. However, advancing MLLMs for ophthalmology is hindered by the lack of unified, comprehensive benchmark datasets for development and evaluation. Most existing benchmarks were designed for earlier models, which focused on narrow tasks or specific disease conditions. These benchmarks typically provide outputs in the form of disease labels rather than free-text responses. As a result, they are less suitable for assessing emerging generative models. In this work, we present LMOD+, a large-scale multimodal ophthalmology benchmark dataset comprising 32,633 instances with multi-granular annotations across 12 common ophthalmic conditions and 5 imaging modalities. The dataset integrates imaging, anatomical structures, demographics, and free-text annotations. It supports primary ophthalmic applications such as anatomical structure recognition, disease screening, disease staging, and demographic prediction for potential performance bias evaluation. Alongside the dataset, we introduce a systematic and unified data curation pipeline that repurposes existing or new datasets for MLLM development. LMOD+ extends our preliminary LMOD benchmark-the first multimodal ophthalmology benchmark for MLLMs-with three major enhancements. First, we expanded the dataset by nearly 50% (from 21,933 to 32,633 instances). The color fundus photography (CFP) modality, the most accessible imaging modality in ophthalmology, was significantly enlarged to cover a broader range of pathological conditions. Second, we broadened task coverage to include (a) 12 binary disease diagnosis tasks for prevalent conditions such as diabetic retinopathy, age-related macular degeneration, and retinal vein occlusion; (b) multi-class ophthalmic disease diagnosis; (c) disease severity classification, including a diabetic retinopathy staging task, which uses two internationally adopted grading standards: the international clinical diabetic retinopathy classification and the Scottish diabetic retinopathy grading scheme classification; and (d) demographic prediction (age and sex) to assess potential model bias. Third, we systematically evaluated 24 state-of-the-art MLLMs, including recent models from the InternVL, Qwen, and DeepSeek families. Our evaluations highlight both the promise and limitations of current MLLMs in ophthalmology. For example, Qwen-7B and InternVL achieved accuracies of 58.26% and 57.83% in disease screening under a zero-shot setting with a single model-a considerably more challenging paradigm than traditional fine-tuning, where separate models are trained for each specific task. InternVL also demonstrated potential in anatomical recognition. Nonetheless, overall performance remained suboptimal and often close to random baselines for challenging tasks such as disease staging, underscoring the substantial gap between general-domain MLLMs and the specialized requirements of ophthalmology. We publicly release the dataset, curation pipeline, and leaderboard to encourage community-wide development and evaluation of MLLMs, with the goal of advancing ophthalmic applications and ultimately reducing the global burden of vision-threatening diseases through AI. The dataset website, benchmark leaderboard, and download link are available at https://kfzyqin.github.io/lmod_plus.
Zhenyue Qin, Yang Liu 0249, Jinyu Ding, Anran Li 0001, Dylan Campbell, Xuansheng Wu, Ke Zou, Tiarnan D. Keenan, Emily Y. Chew, Zhiyong Lu, Ninghao Liu 0001, Xiuzhen Zhang 0001, Qingyu Chen 0001
ACM Trans. Comput. Heal.10
2022 Automated and Accessible Diagnosis of Age-related Macular Degeneration: a Comparative Analysis of the impact of machine learning models in clinical diagnostic Workflows
Qingyu Chen 0001, Tiarnan D. Keenan, Alexis Allot, Sanjeeb Bhandari, Geoff Broadhead, Chantal Cousineau-Krieger, Ellen Davis, William G. Gensheimer, David Grasic, Seema Gupta, Eleni Konstantinou, Tania Lamba, Michele Maiberger, Arnold Oshinsky, Brittany E. Powell, Boonkit Purt, Soo Shin, Hillary Steifel, Alisa T. Thavikulwat, Keith Wroblewski, Sirisha Koirala, Tom Murickan, Michael F. Chiang, Michelle R. Hribar, Emily Y. Chew, Zhiyong Lu
AMIA2
2022 Deep learning automated diagnosis and quantitative classification of cataract type and severity: quantifying the effectiveness and usability of deep learning-assisted disease diagnosis models with 14 ophthalmologists and multi-center validations
Qingyu Chen 0001, Tiarnan D. Keenan, Elvira Agrón, Amr S. Elsawy, Emily Y. Chew, Zhiyong Lu
AMIA2
2022 Robust convolutional neural networks against adversarial attacks on medical images
abstract
Convolutional neural networks (CNNs) have been widely applied to medical images. However, medical images are vulnerable to adversarial attacks by perturbations that are undetectable to human experts. This poses significant security risks and challenges to CNN-based applications in clinic practice. In this work, we quantify the scale of adversarial perturbation imperceptible to clinical practitioners and investigate the cause of the vulnerability in CNNs. Specifically, we discover that noise (i.e., irrelevant or corrupted discriminative information) in medical images might be a key contributor to performance deterioration of CNNs against adversarial perturbations, as noisy features are learned unconsciously by CNNs in feature representations and magnified by adversarial perturbations. In response, we propose a novel defense method by embedding sparsity denoising operators in CNNs for improved robustness. Tested with various state-of-the-art attacking methods on two distinct medical image modalities, we demonstrate that the proposed method can successfully defend against those unnoticeable adversarial attacks by retaining as much as over 90% of its original performance. We believe our findings are critical for improving and deploying CNN-based medical applications in real-world scenarios.
Xiaoshuang Shi, Yifan Peng 0002, Qingyu Chen 0001, Tiarnan D. Keenan, Alisa T. Thavikulwat, Sungwon Lee 0003, Yuxing Tang, Emily Y. Chew, Ronald M. Summers, Zhiyong Lu
Pattern Recognit.4
2021 Deep learning detection of reticular pseudodrusen using multi-modal, multi-task, and multi-attention mechanisms: towards automated and accessible classification of age-related macular degeneration
Qingyu Chen 0001, Tiarnan D. Keenan, Emily Y. Chew, Zhiyong Lu
AMIA2
2021 Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS
Gregory C. Ghahramani, Matthew Brendel, Mingquan Lin, Qingyu Chen 0001, Tiarnan D. Keenan, Kun Chen 0002, Emily Y. Chew, Zhiyong Lu, Yifan Peng 0002, Fei Wang 0001
AMIA5
2021 Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration
abstract
OBJECTIVE: Reticular pseudodrusen (RPD), a key feature of age-related macular degeneration (AMD), are poorly detected by human experts on standard color fundus photography (CFP) and typically require advanced imaging modalities such as fundus autofluorescence (FAF). The objective was to develop and evaluate the performance of a novel multimodal, multitask, multiattention (M3) deep learning framework on RPD detection. MATERIALS AND METHODS: A deep learning framework (M3) was developed to detect RPD presence accurately using CFP alone, FAF alone, or both, employing >8000 CFP-FAF image pairs obtained prospectively (Age-Related Eye Disease Study 2). The M3 framework includes multimodal (detection from single or multiple image modalities), multitask (training different tasks simultaneously to improve generalizability), and multiattention (improving ensembled feature representation) operation. Performance on RPD detection was compared with state-of-the-art deep learning models and 13 ophthalmologists; performance on detection of 2 other AMD features (geographic atrophy and pigmentary abnormalities) was also evaluated. RESULTS: For RPD detection, M3 achieved an area under the receiver-operating characteristic curve (AUROC) of 0.832, 0.931, and 0.933 for CFP alone, FAF alone, and both, respectively. M3 performance on CFP was very substantially superior to human retinal specialists (median F1 score = 0.644 vs 0.350). External validation (the Rotterdam Study) demonstrated high accuracy on CFP alone (AUROC, 0.965). The M3 framework also accurately detected geographic atrophy and pigmentary abnormalities (AUROC, 0.909 and 0.912, respectively), demonstrating its generalizability. CONCLUSIONS: This study demonstrates the successful development, robust evaluation, and external validation of a novel deep learning framework that enables accessible, accurate, and automated AMD diagnosis and prognosis.
Qingyu Chen 0001, Tiarnan D. Keenan, Alexis Allot, Yifan Peng 0002, Elvira Agrón, Amitha Domalpally, Caroline C. W. Klaver, Daniel T. Luttikhuizen, Marcus H. Colyer, Catherine Cukras, Henry E. Wiley, M. Teresa Magone, Chantal Cousineau-Krieger, Wai T. Wong, Yingying Zhu 0003, Emily Y. Chew, Zhiyong Lu
J. Am. Medical Informatics Assoc.2
2020 Detection of reticular pseudodrusen using deep learning
Qingyu Chen 0001, Tiarnan D. Keenan, Yifan Peng 0002, Elvira Agrón, Christopher Hwang, Alisa T. Thavikulwat, Debora Lee, Wai T. Wong, Emily Y. Chew, Zhiyong Lu
AMIA2
2019 A deep learning-based survival model for prediction of progression in late Age-related Macular Degeneration (AMD) from color fundus photographs
Yifan Peng 0002, Tiarnan D. Keenan, Qingyu Chen 0001, Elvira Agrón, Wai T. Wong, Emily Y. Chew, Zhiyong Lu
AMIA2