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Marcin Zablocki

dblp:232/5873 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2019
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › RNA biology › RNA analysis › RNA bioinformatics › RNA structure
RNA secondary structure		 0.412019
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs · Bioinform. 2019
Bioinformatics and computational biology › structural bioinformatics › nucleic acid structure analysis
RNA structural bioinformatics		 0.412019
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs · Bioinform. 2019

Methods — techniques the papers use, named apart from their topics

extended secondary structure prediction · 0.4
YearPublicationVenuePosition
2019 RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs
abstract
Motivation: In the study of 3D RNA structure, information about non-canonical interactions between nucleobases is increasingly important. Specialized databases support investigation of this issue based on experimental data, and several programs can annotate non-canonical base pairs in the RNA 3D structure. However, predicting the extended RNA secondary structure which describes both canonical and non-canonical interactions remains difficult. Results: Here, we present RNAvista that allows predicting an extended RNA secondary structure from sequence or from the list enumerating canonical base pairs only. RNAvista is implemented as a publicly available webserver with user-friendly interface. It runs on all major web browsers. Availability and implementation: http://rnavista.cs.put.poznan.pl.
Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk
 Bioinform.2