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Daniel LeVine

dblp:241/4613 · DBLP profile ↗
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2ranked-venue papers
1as first author
2since 2021 · last 2025
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 2 · 1 first-author · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
2 papers
Language models and text generation · 52% Generative modeling · 48%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 5 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Natural language and speech › Language models and text generation › pre-trained language model
causal language model
0.912025
Non-Markovian Discrete Diffusion with Causal Language Models · NeurIPS 2025
Machine learning › Generative modeling
diffusion model
0.912025
Non-Markovian Discrete Diffusion with Causal Language Models · NeurIPS 2025
Machine learning › Generative modeling › diffusion model
discrete diffusion model
0.912025
Non-Markovian Discrete Diffusion with Causal Language Models · NeurIPS 2025
Bioinformatics and computational biology › single-cell analysis
single-cell transcriptomics
0.812024
Cell2Sentence: Teaching Large Language Models the Language of Biology · ICML 2024
Natural language and speech › Language models and text generation
text generation
0.212024
Cell2Sentence: Teaching Large Language Models the Language of Biology · ICML 2024

Methods — techniques the papers use, named apart from their topics

large language model fine-tuning · 1.5cell sentences · 1.5transformer · 0.9pretrained LLM weight reuse · 0.9
YearPublicationVenuePosition
2025 Non-Markovian Discrete Diffusion with Causal Language Models
abstract
Discrete diffusion models offer a flexible, controllable approach to structured sequence generation, yet they still lag behind causal language models in expressive power. A key limitation lies in their reliance on the Markovian assumption, which restricts each step to condition only on the current state, leading to potential uncorrectable error accumulation. In this paper, We introduce CaDDi, a discrete diffusion model that conditions on the entire generative trajectory, thereby lifting the Markov constraint and allowing the model to revisit and improve past states. By unifying sequential (causal) and temporal (diffusion) reasoning in a single non‑Markovian transformer, CaDDi also treats standard causal language models as a special case and permits the direct reuse of pretrained LLM weights with no architectural changes. Empirically, CaDDi outperforms state‑of‑the‑art discrete diffusion baselines on natural‑language benchmarks, substantially narrowing the remaining gap to large autoregressive transformers.
Yangtian Zhang, Sizhuang He, Daniel LeVine, Lawrence Zhao, Syed Asad Rizvi, Shiyang Zhang, Emanuele Zappala, Rex Ying, David van Dijk
NeurIPS3
2024 Cell2Sentence: Teaching Large Language Models the Language of Biology
abstract
We introduce Cell2Sentence (C2S), a novel method to directly adapt large language models to a biological context, specifically single-cell transcriptomics. By transforming gene expression data into "cell sentences," C2S bridges the gap between natural language processing and biology. We demonstrate cell sentences enable the fine-tuning of language models for diverse tasks in biology, including cell generation, complex cell-type annotation, and direct data-driven text generation. Our experiments reveal that GPT-2, when fine-tuned with C2S, can generate biologically valid cells based on cell type inputs, and accurately predict cell types from cell sentences. This illustrates that language models, through C2S fine-tuning, can acquire a significant understanding of single-cell biology while maintaining robust text generation capabilities. C2S offers a flexible, accessible framework to integrate natural language processing with transcriptomics, utilizing existing models and libraries for a wide range of biological applications.
Daniel LeVine, Syed Asad Rizvi, Sacha Levy, Nazreen Pallikkavaliyaveetil, Sina Ghadermarzi, Ruiming Wu, Zihe Zheng, Ivan Vrkic, Anna Zhong, Daphne Raskin, Insu Han, Antonio H. O. Fonseca, Josue Ortega Caro, Amin Karbasi, Rahul Madhav Dhodapkar, David van Dijk
ICML1