Demo Data from EDBT 2026 / reviewers in the wild / expert
David R. Damerell
dblp:247/2180
· DBLP profile ↗
3ranked-venue papers
1as first author
0since 2021 · last 2020
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 3 · 1 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
3 papers |
Bioinformatics and computational biology · 100% |
Topics — the 6 heaviest of 6, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › structural bioinformatics
molecular structure visualization |
0.4 | 1 | 2020 | MichelaNglo: sculpting protein views on web pages without coding · Bioinform. 2020 |
Bioinformatics and computational biology › protein analysis
protein bioinformatics |
0.4 | 1 | 2019 | UbiHub: a data hub for the explorers of ubiquitination pathways · Bioinform. 2019 |
Bioinformatics and computational biology › bioinformatics infrastructure
web-based bioinformatics tools |
0.4 | 1 | 2019 | SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications · Bioinform. 2019 |
Bioinformatics and computational biology › structural bioinformatics
protein structure |
0.1 | 1 | 2020 | MichelaNglo: sculpting protein views on web pages without coding · Bioinform. 2020 |
Bioinformatics and computational biology
drug discovery |
0.1 | 1 | 2019 | UbiHub: a data hub for the explorers of ubiquitination pathways · Bioinform. 2019 |
Bioinformatics and computational biology › drug discovery
target prioritization |
0.1 | 1 | 2019 | UbiHub: a data hub for the explorers of ubiquitination pathways · Bioinform. 2019 |
Methods — techniques the papers use, named apart from their topics
web-based visualization · 0.4phylogenetic tree visualization · 0.4modular software design · 0.4data integration · 0.4
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2020 | MichelaNglo: sculpting protein views on web pages without codingabstractMOTIVATION: The sharing of macromolecular structural information online by scientists is predominantly performed via 2D static images, since the embedding of interactive 3D structures in webpages is non-trivial. Whilst the technologies to do so exist, they are often only implementable with significant web coding experience. RESULTS: Michelaɴɢʟo is an accessible and open-source web-based application that supports the generation, customization and sharing of interactive 3D macromolecular visualizations for digital media without requiring programming skills. A PyMOL file, PDB file, PDB identifier code or protein/gene name can be provided to form the basis of visualizations using the NGL JavaScript library. Hyperlinks that control the view can be added to text within the page. Protein-coding variants can be highlighted to support interpretation of their potential functional consequences. The resulting visualizations and text can be customized and shared, as well as embedded within existing websites by following instructions and using a self-contained download. Michelaɴɢʟo allows researchers to move away from static images and instead engage, describe and explain their protein to a wider audience in a more interactive fashion. AVAILABILITY AND IMPLEMENTATION: Michelaɴɢʟo is hosted at michelanglo.sgc.ox.ac.uk. The Python code is freely available at https://github.com/thesgc/MichelaNGLo, along with documentations about its implementation. Matteo P. Ferla, Alistair T. Pagnamenta, David R. Damerell, Jenny C. Taylor, Brian D. Marsden |
Bioinform. | 3 |
| 2019 | SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
David R. Damerell, Claire Strain-Damerell, Sefa Garsot, Stephen P. Joyce, Paul Barrett, Brian D. Marsden |
Bioinform. | 1 |
| 2019 | UbiHub: a data hub for the explorers of ubiquitination pathwaysabstractMOTIVATION: Protein ubiquitination plays a central role in important cellular machineries such as protein degradation or chromatin-mediated signaling. With the recent discovery of the first potent ubiquitin-specific protease inhibitors, and the maturation of proteolysis targeting chimeras as promising chemical tools to exploit the ubiquitin-proteasome system, protein target classes associated with ubiquitination pathways are becoming the focus of intense drug-discovery efforts. RESULTS: We have developed UbiHub, an online resource that can be used to visualize a diverse array of biological, structural and chemical data on phylogenetic trees of human protein families involved in ubiquitination signaling, including E3 ligases and deubiquitinases. This interface can inform target prioritization and drug design, and serves as a navigation tool for medicinal chemists, structural and cell biologists exploring ubiquitination pathways. AVAILABILITY AND IMPLEMENTATION: https://ubihub.thesgc.org. David R. Damerell, Leonidas Koukouflis, Yufeng Tong 0001, Brian D. Marsden, Matthieu Schapira |
Bioinform. | 2 |