Neural coupling is a fundamental mechanism in neuroscience that facilitates the emergence of cognitive functions through dynamic interactions and synchronization among distributed brain regions. Inspired by this principle, we pose the question: Might the biological mechanism of neural oscillatory synchronization inspire the feature representation learning for neuroscience? By addressing this question through the Kuramoto model, renowned for simulating oscillatory dynamics, we present a novel physics-informed deep model, `SyncBrain`, it models brain regions as interacting oscillatory units and simulates their temporal dynamics and synchronization patterns to distinguish cognitive states. Furthermore, inspired by the brain's inherent ability to dynamically attend to critical temporal information, we incorporate an adaptive control module that introduces an attention-like mechanism to guide information flow. We evaluate our model on multiple functional neuroimaging datasets, it demonstrates promising performance and enhanced interpretability in both cognitive state decoding and early disease diagnosis, outperforming existing computational methods. These results demonstrate the effectiveness of neural oscillatory mechanisms in shaping robust and interpretable machine learning models for neuroscience applications.

Functional Magnetic Resonance Image (fMRI) is commonly employed to study human brain activity, since it offers insight into the relationship between functional fluctuations and human behavior. To enhance analysis and comprehension of brain activity, Graph Neural Networks (GNNs) have been widely applied to the analysis of functional connectivities (FC) derived from fMRI data, due to their ability to capture the synergistic interactions among brain regions. However, in the human brain, performing complex tasks typically involves the activation of certain pathways, which could be represented as paths across graphs. As such, conventional GNNs struggle to learn from these pathways due to the long-range dependencies of multiple pathways. To address these challenges, we introduce a novel framework BrainMAP to learn multiple pathways in brain networks. BrainMAP leverages sequential models to identify long-range correlations among sequentialized brain regions and incorporates an aggregation module based on Mixture of Experts (MoE) to learn from multiple pathways. Our comprehensive experiments highlight BrainMAP's superior performance. Furthermore, our framework enables explanatory analyses of crucial brain regions involved in tasks.

State‑space models (SSMs) have become a cornerstone for unraveling brain dynamics, capturing how latent neural states evolve over time and give rise to observed signals. By combining deep learning’s flexibility with SSMs’ principled dynamical structure, recent studies have achieved powerful fits to functional neuroimaging data. However, most approaches still view the brain as a set of loosely connected regions or impose oversimplified network priors, falling short of a truly holistic, self‐organized dynamical system perspective. Brain functional connectivity (FC) at each time point naturally forms a symmetric positive definite (SPD) matrix, which lives on a curved Riemannian manifold rather than in Euclidean space. Capturing the trajectories of these SPD matrices is key to understanding how coordinated networks support cognition and behavior. To this end, we introduce *GeoDynamics*, a geometric state space neural network that tracks latent brain state trajectories directly on the high‑dimensional SPD manifold. *GeoDynamics* embeds each connectivity matrix into a manifold‑aware recurrent framework, learning smooth, geometry‑respecting transitions that reveal task‐driven state changes and early markers of Alzheimer’s, Parkinson’s, and autism. Beyond neuroscience, we validate *GeoDynamics* on human action recognition benchmarks (UTKinect, Florence, HDM05), demonstrating its scalability and robustness in modeling complex spatiotemporal dynamics across diverse domains.

In both neuroscience and artificial intelligence (AI), it is well-established that neural “coupling” gives rise to dynamically distributed systems. These systems exhibit self-organized spatiotemporal patterns of synchronized neural oscillations, enabling the representation of abstract concepts. By capitalizing on the unprecedented amount of human neuroimaging data, we propose that advancing the theoretical understanding of rhythmic coordination in neural circuits can offer powerful design principles for the next generation of machine learning models with improved efficiency and robustness. To this end, we introduce a physics-informed deep learning framework for \underline{B}rain \underline{R}hythm \underline{I}dentification by \underline{K}uramoto and \underline{C}ontrol (coined \textit{BRICK}) to characterize the synchronization of neural oscillations that shapes the dynamics of evolving cognitive states. Recognizing that brain networks are structurally connected yet behaviorally dynamic, we further conceptualize rhythmic neural activity as an artificial dynamical system of coupled oscillators, offering a shared mechanistic bridge to brain-inspired machine intelligence. By treating each node as an oscillator interacting with its neighbors, this approach moves beyond the conventional paradigm of graph heat diffusion and establishes a new regime of representation compression through oscillatory synchronization. Empirical evaluations demonstrate that this synchronization-driven mechanism not only mitigates over-smoothing in deep GNNs but also enhances the model’s capacity for reasoning and solving complex graph-based problems.

Graphs are ubiquitous in various domains, such as social networks and biological systems. Despite the great successes of graph neural networks (GNNs) in modeling and analyzing complex graph data, the inductive bias of locality assumption, which involves exchanging information only within neighboring connected nodes, restricts GNNs in capturing long-range dependencies and global patterns in graphs. Inspired by the classic Brachistochrone problem, we seek how to devise a new inductive bias for cutting-edge graph application and present a general framework through the lens of variational analysis. The backbone of our framework is a two-way mapping between the discrete GNN model and continuous diffusion functional, which allows us to design application-specific objective function in the continuous domain and engineer discrete deep model with mathematical guarantees. First, we address over-smoothing in current GNNs. Specifically, our inference reveals that the existing layer-by-layer models of graph embedding learning are equivalent to a ${\ell _2}$-norm integral functional of graph gradients, which is the underlying cause of the over-smoothing problem. Similar to edge-preserving filters in image denoising, we introduce the total variation (TV) to promote alignment of the graph diffusion pattern with the global information present in community topologies. On top of this, we devise a new selective mechanism for inductive bias that can be easily integrated into existing GNNs and effectively address the trade-off between model depth and over-smoothing. Second, we devise a novel generative adversarial network (GAN) to predict the spreading flows in the graph through a neural transport equation. To avoid the potential issue of vanishing flows, we tailor the objective function to minimize the transportation within each community while maximizing the inter-community flows. Our new GNN models achieve state-of-the-art (SOTA) performance on graph learning benchmarks such as Cora, Citeseer, and Pubmed.

Determining drug-drug interactions (DDIs) is an important part of pharmacovigilance and has a vital impact on public health. Compared with drug trials, obtaining DDI information from scientific articles is a faster and lower cost but still a highly credible approach. However, current DDI text extraction methods consider the instances generated from articles to be independent and ignore the potential connections between different instances in the same article or sentence. Effective use of external text data could improve prediction accuracy, but existing methods cannot extract key information from external data accurately and reasonably, resulting in low utilization of external data. In this study, we propose a DDI extraction framework, instance position embedding and key external text for DDI (IK-DDI), which adopts instance position embedding and key external text to extract DDI information. The proposed framework integrates the article-level and sentence-level position information of the instances into the model to strengthen the connections between instances generated from the same article or sentence. Moreover, we introduce a comprehensive similarity-matching method that uses string and word sense similarity to improve the matching accuracy between the target drug and external text. Furthermore, the key sentence search method is used to obtain key information from external data. Therefore, IK-DDI can make full use of the connection between instances and the information contained in external text data to improve the efficiency of DDI extraction. Experimental results show that IK-DDI outperforms existing methods on both macro-averaged and micro-averaged metrics, which suggests our method provides complete framework that can be used to extract relationships between biomedical entities and process external text data.

Accurate mapping forest height at fine spatial resolution is essential for evaluating terrestrial ecosystem service. Yet, current assessments of forest height rely primarily on statistical or coarse scale model estimates, thus lack of spatial details for decision making at local scales. Recent advances in remote sensing technology provide great opportunities to fill this gap. Satellite data from radar and multispectral instruments are promising in providing spatial continuous observations. Here, we present a work that combined field measurements and satellite imagery to generate a wall-to-wall forest height map at a 30-m spatial resolution. Field plot data collected from October 2017 to April 2018 were used for model calibration and validation. A series of characteristic metrics were tested, including Landsat-8 multispectral reflectance and vegetation indices, Sentinel-1 C-band, and PALSAR-2 L-band SAR backscattering coefficients and difference index, and SRTM topographic variables. Our results indicate that a few variables from SRTM, Landsat, and Sentinel-1 show stronger relationships with forest height. We evaluated three types of models, including multiple linear regression (MLR), support vector regression (SVR), random forest (RF). Results show that RF model perform best (R2=0.44, RSME=4.7 m) compared with the other two methods (MLR, R2=0.31, RSME=5.0 m; SVR, R2=0.37, RSME=4.5 m).

The functional magnetic resonance imaging (fMRI) is a noninvasive technique for studying brain activity, such as brain network analysis, neural disease automated diagnosis and so on. However, many existing methods have some drawbacks, such as limitations of graph theory, lack of global topology characteristic, local sensitivity of functional connectivity, and absence of temporal or context information. In addition to many numerical features, fMRI time series data also cover specific contextual knowledge and global fluctuation information. Here, we propose multi-scale time-series kernel-based learning model for brain disease diagnosis, based on Jensen-Shannon divergence. First, we calculate correlation value within and between brain regions over time. In addition, we extract multi-scale synergy expression probability distribution (interactional relation) between brain regions. Also, we produce state transition probability distribution (sequential relation) on single brain regions. Then, we build time-series kernel-based learning model based on Jensen-Shannon divergence to measure similarity of brain functional connectivity. Finally, we provide an efficient system to deal with brain network analysis and neural disease automated diagnosis. On Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, our proposed method achieves accuracy of 0.8994 and AUC of 0.8623. On Major Depressive Disorder (MDD) dataset, our proposed method achieves accuracy of 0.9166 and AUC of 0.9263. Experiments show that our proposed method outperforms other existing excellent neural disease automated diagnosis approaches. It shows that our novel prediction method performs great accurate for identification of brain diseases as well as existing outstanding prediction tools.