EDBT 2026 Demo / reviewers in the wild / expert
Han Zhang 0002
dblp:26/4189-2
· DBLP profile ↗
63ranked-venue papers
2as first author
30since 2021 · last 2026
0000-0002-6645-8810ORCID · conflict
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 48 · 1 first-author · 19 since 2021Graphics, computer vision, multimedia, augmented reality and games · 38 · 1 first-author · 11 since 2021Artificial intelligence and machine learning · 13 · 1 first-author · 9 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | UniSurf: Universal lifespan cortical surface reconstruction
Zifeng Lian, Jiameng Liu, Xiaoye Li, Han Zhang 0002, Zhiming Cui 0001, Feng Shi 0001, Dinggang Shen |
Medical Image Anal. | 6 |
| 2026 | Multi-organ guided diagnosis of mild cognitive impairment via hierarchical alignment and knowledge distillation
Shilun Zhao, Kaicong Sun, Shuwei Bai, Weilin Zhou, Jiangtao Liang, Zhongxiang Ding, Han Zhang 0002, Dinggang Shen |
Medical Image Anal. | 10 |
| 2026 | Unlocking shared-specific features of multi-modal brain graphs for accurate psychiatric diagnosis
Geng Chen 0001, Xuyun Wen, Lifang Wei, Han Zhang 0002, Dinggang Shen |
Pattern Recognit. | 5 |
| 2026 | FLEX-MoCo: Flexible MRI motion correction using motion recognition and adaptive routing
Feng Li 0039, Zhenrong Shen 0001, Jiangdong Cai, Rongrong Xie, Han Zhang 0002, Dinggang Shen, Feng Shi 0001, Qian Wang 0001 |
Pattern Recognit. | 6 |
| 2026 | Multi-task dynamic graph learning for brain disorder identification with functional MRI
Yunling Ma, Chaojun Zhang, Han Zhang 0002, Shihui Ying |
Pattern Recognit. | 4 |
| 2026 | Positional Prompts-Enhanced Brain-Heart-Gut Interactions for Mild Cognitive Impairment DiagnosisabstractMild cognitive impairment (MCI) is the prodromal stage of dementia involving complex interactions between the brain and peripheral organs. Emerging evidence indicates that heart dysfunction and gut microbiota dysbiosis can contribute to MCI pathogenesis. Yet, these discoveries of cross-organ interactions have not been applied to assist MCI diagnosis. In this work, we propose a novel diagnostic framework that exploits the interactions of brain, heart, and gut using whole-body PET images to guide MCI diagnosis for scenarios when only brain MRI, PET, or PET&MRI are available. Specifically, we collected a multi-cohort, multi-modal dataset comprising 1,545 whole-body PET images, 6,010 brain MR images, and 2,446 brain PET images from eight data centers. Organ-specific image encoders are first pretrained for the brain, heart, and gut individually. Then, to effectively align and integrate brain, heart, and gut features, we introduce positional prompts to act as anatomical-level attention to highlight disease-relevant spatial regions, and further develop hierarchical Transformers to model brain-heart, brain-gut, and brain-heart-gut interactions. Finally, to achieve MCI diagnosis using only brain images, we transfer the above brain-heart-gut model to a brain-only model via an introduced multi-level knowledge distillation scheme, including sample-level contrastive distillation, group-level distribution alignment, and response-level supervision. Extensive experiments on multi-center data demonstrate the superiority of our method over the state-of-the-art methods by resorting to effective integration of heart and gut interactions for MCI diagnosis. Shilun Zhao, Shuwei Bai, Dengqiang Jia, Jiangtao Liang, Han Zhang 0002, Ya Zhang 0002, Zhongxiang Ding, Yin Xu 0001, Kaicong Sun, Dinggang Shen |
IEEE Trans. Medical Imaging | 7 |
| 2025 | MUC: Mixture of Uncalibrated Cameras for Robust 3D Human Body ReconstructionabstractMultiple cameras can provide comprehensive multi-view video coverage of a person. Fusing this multi-view data is crucial for tasks like behavioral analysis, although it traditionally requires camera calibration—a process that is often complex. Moreover, previous studies have overlooked the challenges posed by self-occlusion under multiple views and the continuity of human body shape estimation. In this study, we introduce a method to reconstruct the 3D human body from multiple uncalibrated camera views. Initially, we utilize a pre-trained human body encoder to process each camera view individually, enabling the reconstruction of human body models and parameters for each view along with predicted camera positions. Rather than merely averaging the models across views, we develop a neural network trained to assign weights to individual views for all human body joints, based on the estimated distribution of joint distances from each camera. Additionally, we focus on the mesh surface of the human body for dynamic fusion, allowing for the seamless integration of facial expressions and body shape into a unified human body model. Our method has shown excellent performance in reconstructing the human body on two public datasets, advancing beyond previous work from the SMPL model to the SMPL-X model. This extension incorporates more complex hand poses and facial expressions, enhancing the detail and accuracy of the reconstructions. Crucially, it supports the flexible ad-hoc deployment of any number of cameras, offering significant potential for various applications. Yitao Zhu, Sheng Wang 0014, Mengjie Xu, Zixu Zhuang, Zhixin Wang, Kaidong Wang, Han Zhang 0002, Qian Wang 0001 |
AAAI | 7 |
| 2025 | Semantic-Brain Mapping Enhanced Image Reconstruction from FMRI via Latent Diffusion and Large Language Models
Xiaowei He 0001, Han Zhang 0002, Yudan Ren |
BIBM | 3 |
| 2025 | MITracker: Multi-View Integration for Visual Object TrackingabstractMulti-view object tracking (MVOT) offers promising solutions to challenges such as occlusion and target loss, which are common in traditional single-view tracking. However, progress has been limited by the lack of comprehensive multi-view datasets and effective cross-view integration methods. To overcome these limitations, we compiled a Multi-View object Tracking (MVTrack) dataset of 234K high-quality annotated frames featuring 27 distinct objects across various scenes. In conjunction with this dataset, we introduce a novel MVOT method, Multi-View Integration Tracker (MITracker), to efficiently integrate multi-view object features and provide stable tracking outcomes. MI-Tracker can track any object in video frames of arbitrary length from arbitrary viewpoints. The key advancements of our method over traditional single-view approaches come from two aspects: (1) MITracker transforms 2D image features into a 3D feature volume and compresses it into a bird’s eye view (BEV) plane, facilitating inter-view information fusion; (2) we propose an attention mechanism that leverages geometric information from fused 3D feature volume to refine the tracking results at each view. MI-Tracker outperforms existing methods on the MVTrack and GMTD datasets, achieving state-of-the-art performance. The code and the new dataset will be available at mii-laboratory.github.io/MITracker. 1 Mengjie Xu, Yitao Zhu, Jiaming Li 0012, Zhenrong Shen 0001, Sheng Wang 0014, Haolin Huang, Han Zhang 0002, Qian Wang 0001 |
CVPR | 9 |
| 2025 | SEE: Semantically Aligned EEG-to-Text TranslationabstractDecoding neurophysiological signals into language is of great research interest within brain-computer interface (BCI) applications. Electroencephalography (EEG), known for its non-invasiveness, ease of use, and cost-effectiveness, has been a popular method in this field. However, current EEG-to-Text decoding approaches face challenges due to the huge domain gap between EEG recordings and raw texts, inherent data bias, and small closed vocabularies. In this paper, we propose SEE: Semantically Aligned EEG-to-Text Translation, a novel method aimed at improving EEG-to-Text decoding by seamlessly integrating two modules into a pre-trained BART language model. These two modules include (1) a Cross-Modal Codebook that learns cross-modal representations to enhance feature consolidation and mitigate domain gap, and (2) a Semantic Matching Module that fully utilizes pre-trained text representations to align multi-modal features extracted from EEG-Text pairs while considering noise caused by false negatives, i.e., data from different EEG-Text pairs that have similar semantic meanings. Experimental results on the Zurich Cognitive Language Processing Corpus (ZuCo) demonstrate the effectiveness of SEE, which enhances the feasibility of accurate EEG-to-Text decoding. Yitian Tao, Luoyu Wang, Han Zhang 0002 |
ICASSP | 6 |
| 2025 | Revolutionizing Disease Diagnosis with simultaneous functional PET/MR and Deeply Integrated Brain Metabolic, Hemodynamic, and Perfusion NetworksabstractSimultaneous functional PET/MR (sf-PET/MR) presents a cutting-edge multimodal neuroimaging technique. It provides an unprecedented opportunity for concurrently monitoring and integrating multifaceted brain networks built by spatiotemporally covaried metabolic activity, neural activity, and cerebral blood flow (perfusion). Albeit high scientific/clinical values, short in hardware accessibility of PET/MR hinders its applications, let alone modern AI-based PET/MR fusion models. Our objective is to develop a clinically feasible AI-based disease diagnosis model trained on comprehensive sf-PET/MR data with the power of, during inferencing, allowing single modality input (e.g., PET only) as well as enforcing multimodal-based accuracy. To this end, we propose MX-ARM, a multimodal MiXture-of-experts Alignment and Reconstruction Model. It is modality detachable and exchangeable, allocating different multi-layer perceptrons dynamically ("mixture of experts") through learnable weights to learn respective representations from different modalities. Such design will not sacrifice model performance in uni-modal situation. To fully exploit the inherent complex and nonlinear relation among modalities while producing fine-grained representations for uni-modal inference, a modal alignment module is utilized to line up a dominant modality (e.g., PET) with representations of auxiliary modalities (MR). We further adopt multimodal reconstruction to promote the quality of learned features. Experiments on precious multimodal sf-PET/MR data for Mild Cognitive Impairment diagnosis showcase the efficacy of MX-ARM toward clinically feasible precision medicine. Luoyu Wang, Yitian Tao, Siwei Liu 0013, Hongcheng Shi, Dinggang Shen, Han Zhang 0002 |
ICASSP | 8 |
| 2025 | Wavelet-Driven Decoupling and Physics-Informed Mapping Network for Accelerated Multi-parametric MR Imaging
Ruilong Dan, Kaicong Sun, Minqiang Jia, Han Zhang 0002, Xiaopeng Zong, Dinggang Shen |
MICCAI (1) | 6 |
| 2025 | Sparsely Labeled fMRI Data Denoising with Meta-learning-Based Semi-supervised Domain Adaptation
Keun-Soo Heo, Ji-Wung Han, Soyeon Bak, Minjoo Lim, Bogyeong Kang, Weili Lin, Han Zhang 0002, Dinggang Shen, Tae-Eui Kam |
MICCAI (7) | 8 |
| 2025 | GeneMorphFormer: Transformer-Driven Cross-Scale Mapping from Gene Expression to Cortical Morphology
Han Zhang 0002, Qitai Sun, Chenjie Jia, Xiaowei He 0001, Yudan Ren |
MICCAI (14) | 2 |
| 2025 | MAK-GAN: Multi-level Adaptive Convolutional Kernels for Asymmetric Multi-modal PET Reconstruction
Xinyi Zeng, Pinxian Zeng, Yan Wang 0015, Luping Zhou, Caiwen Jiang, Han Zhang 0002, Dinggang Shen |
MICCAI (2) | 7 |
| 2024 | Semantic Mapping and Reconstruction from Brain Activation to Natural Images Using LDM and LLM
Han Zhang 0002, Yaonai Wei, Chenjie Jia, Qitai Sun, Xiaowei He 0001, Yudan Ren |
ICONIP (4) | 1 |
| 2024 | WSSADN: A Weakly Supervised Spherical Age-Disentanglement Network for Detecting Developmental Disorders with Structural MRI
Pengcheng Xue, Dong Nie, Meijiao Zhu, Han Zhang 0002, Daoqiang Zhang, Xuyun Wen |
MICCAI (11) | 5 |
| 2024 | LoCI-DiffCom: Longitudinal Consistency-Informed Diffusion Model for 3D Infant Brain Image Completion
Tianli Tao, Yitian Tao, Haowen Deng, Xinyi Cai, Gaofeng Wu, Kaidong Wang, Haifeng Tang, Lixuan Zhu, Zhuoyang Gu, Dinggang Shen, Han Zhang 0002 |
MICCAI (2) | 12 |
| 2024 | A Unified Multi-Modality Fusion Framework for Deep Spatio-Spectral-Temporal Feature Learning in Resting-State fMRI DenoisingabstractResting-state functional magnetic resonance imaging (rs-fMRI) is a commonly used functional neuroimaging technique to investigate the functional brain networks. However, rs-fMRI data are often contaminated with noise and artifacts that adversely affect the results of rs-fMRI studies. Several machine/deep learning methods have achieved impressive performance to automatically regress the noise-related components decomposed from rs-fMRI data, which are expressed as the pairs of a spatial map and its associated time series. However, most of the previous methods individually analyze each modality of the noise-related components and simply aggregate the decision-level information (or knowledge) extracted from each modality to make a final decision. Moreover, these approaches consider only the limited modalities making it difficult to explore class-discriminative spectral information of noise-related components. To overcome these limitations, we propose a unified deep attentive spatio-spectral-temporal feature fusion framework. We first adopt a learnable wavelet transform module at the input-level of the framework to elaborately explore the spectral information in subsequent processes. We then construct a feature-level multi-modality fusion module to efficiently exchange the information from multi-modality inputs in the feature space. Finally, we design confidence-based voting strategies for decision-level fusion at the end of the framework to make a robust final decision. In our experiments, the proposed method achieved remarkable performance for noise-related component detection on various rs-fMRI datasets. Minjoo Lim, Keun-Soo Heo, Junmo Kim 0001, Bogyeong Kang, Weili Lin, Han Zhang 0002, Dinggang Shen, Tae-Eui Kam |
IEEE J. Biomed. Health Informatics | 6 |
| 2024 | Memory-Based Cross-Modal Semantic Alignment Network for Radiology Report GenerationabstractGenerating radiology reports automatically reduces the workload of radiologists and helps the diagnoses of specific diseases. Many existing methods take this task as modality transfer process. However, since the key information related to disease accounts for a small proportion in both image and report, it is hard for the model to learn the latent relation between the radiology image and its report, thus failing to generate fluent and accurate radiology reports. To tackle this problem, we propose a memory-based cross-modal semantic alignment model (MCSAM) following an encoder-decoder paradigm. MCSAM includes a well initialized long-term clinical memory bank to learn disease-related representations as well as prior knowledge for different modalities to retrieve and use the retrieved memory to perform feature consolidation. To ensure the semantic consistency of the retrieved cross modal prior knowledge, a cross-modal semantic alignment module (SAM) is proposed. SAM is also able to generate semantic visual feature embeddings which can be added to the decoder and benefits report generation. More importantly, to memorize the state and additional information while generating reports with the decoder, we use learnable memory tokens which can be seen as prompts. Extensive experiments demonstrate the promising performance of our proposed method which generates state-of-the-art performance on the MIMIC-CXR dataset. Yitian Tao, Liyan Ma, Jing Yu 0007, Han Zhang 0002 |
IEEE J. Biomed. Health Informatics | 4 |
| 2024 | Hierarchical Graph Convolutional Network Built by Multiscale Atlases for Brain Disorder Diagnosis Using Functional ConnectivityabstractFunctional connectivity network (FCN) data from functional magnetic resonance imaging (fMRI) is increasingly used for the diagnosis of brain disorders. However, state-of-the-art studies used to build the FCN using a single brain parcellation atlas at a certain spatial scale, which largely neglected functional interactions across different spatial scales in hierarchical manners. In this study, we propose a novel framework to perform multiscale FCN analysis for brain disorder diagnosis. We first use a set of well-defined multiscale atlases to compute multiscale FCNs. Then, we utilize biologically meaningful brain hierarchical relationships among the regions in multiscale atlases to perform nodal pooling across multiple spatial scales, namely "Atlas-guided Pooling (AP)." Accordingly, we propose a multiscale-atlases-based hierarchical graph convolutional network (MAHGCN), built on the stacked layers of graph convolution and the AP, for a comprehensive extraction of diagnostic information from multiscale FCNs. Experiments on neuroimaging data from 1792 subjects demonstrate the effectiveness of our proposed method in the diagnoses of Alzheimer's disease (AD), the prodromal stage of AD [i.e., mild cognitive impairment (MCI)], as well as autism spectrum disorder (ASD), with the accuracy of 88.9%, 78.6%, and 72.7%, respectively. All results show significant advantages of our proposed method over other competing methods. This study not only demonstrates the feasibility of brain disorder diagnosis using resting-state fMRI empowered by deep learning but also highlights that the functional interactions in the multiscale brain hierarchy are worth being explored and integrated into deep learning network architectures for a better understanding of the neuropathology of brain disorders. The codes for MAHGCN are publicly available at "https://github.com/MianxinLiu/MAHGCN-code." Mianxin Liu, Han Zhang 0002, Feng Shi 0001, Dinggang Shen |
IEEE Trans. Neural Networks Learn. Syst. | 2 |
| 2023 | AutoEncoder-Driven Multimodal Collaborative Learning for Medical Image Synthesis
Bing Cao 0002, Zhiwei Bi, Qinghua Hu, Han Zhang 0002, Nannan Wang 0001, Xinbo Gao 0001, Dinggang Shen |
Int. J. Comput. Vis. | 4 |
| 2023 | Individualized Assessment of Brain Aβ Deposition With fMRI Using Deep LearningabstractPET-based Alzheimer's disease (AD) assessment has many limitations in large-scale screening. Non-invasive techniques such as resting-state functional magnetic resonance imaging (rs-fMRI) have been proven valuable in early AD diagnosis. This study investigated feasibility of using rs-fMRI, especially functional connectivity (FC), for individualized assessment of brain amyloid-β deposition derived from PET. We designed a graph convolutional networks (GCNs) and random forest (RF) based integrated framework for using rs-fMRI-derived multi-level FC networks to predict amyloid-β PET patterns with the OASIS-3 (N = 258) and ADNI-2 (N = 291) datasets. Our method achieved satisfactory accuracy not only in Aβ-PET grade classification (for negative, intermediate, and positive grades, with accuracy in the three-class classification as 62.8% and 64.3% on two datasets, respectively), but also in prediction of whole-brain region-level Aβ-PET standard uptake value ratios (SUVRs) (with the mean square errors as 0.039 and 0.074 for two datasets, respectively). Model interpretability examination also revealed the contributive role of the limbic network. This study demonstrated high feasibility and reproducibility of using low-cost, more accessible magnetic resonance imaging (MRI) to approximate PET-based diagnosis. Chaolin Li, Mianxin Liu, Lang Mei, Feng Shi 0001, Han Zhang 0002, Dinggang Shen |
IEEE J. Biomed. Health Informatics | 7 |
| 2023 | Outcome Prediction of Unconscious Patients Based on Weighted Sparse Brain Network ConstructionabstractIt is quite challenging to establish a prompt and reliable prognosis assessment for acquired brain injury (ABI) patients with persistent severe disorders of consciousness (DOC) like unconscious comatose and unresponsive wakefulness syndrome (a.k.a., vegetative state). Recent advances in brain functional imaging and functional net-work analysis have demonstrated its potential in determining the consciousness level and prognostic outcome for ABI patients with DOC. However, the diagnostic and prognostic usefulness of the whole-brain functional connectome based on advanced machine learning techniques has not been fully evaluated. The first aim of this study is to predict the outcome of individual unconscious ABI patients during a three-month follow-up. The second aim is to conduct precise individualized differentiation among different consciousness levels for exploring the neurobiological mechanisms underlying DOC. Based on resting-state fMRI, we construct large-scale functional networks by using a weighted sparse model, which ensures sparsity and interpretability by preserving strong functional connections. The functional connection strengths are exploited as features for outcome prediction and consciousness level differentiation. We achieve significantly improved consciousness level classification (accuracy: 84.78%) and recovery outcome prediction (accuracy: 89.74%) compared to other network construction methods. More importantly, we reveal the contributive connections across the entire brain in both tasks. These connections could serve as the potential biomarkers for better understanding of consciousness and further provide new insight into the development of diagnostic, prognostic, and effective therapeutic guidelines for ABI patients with DOC. Renping Yu, Han Zhang 0002, Xuehai Wu, Xuan Fei, Zengxin Qi, Di Zang, Weijun Tang, Ying Mao 0002, Dinggang Shen |
IEEE J. Biomed. Health Informatics | 2 |
| 2022 | Common feature learning for brain tumor MRI synthesis by context-aware generative adversarial network
Pu Huang 0001, Dengwang Li, Zhicheng Jiao, Dongming Wei, Bing Cao 0002, Zhanhao Mo, Qian Wang 0001, Han Zhang 0002, Dinggang Shen |
Medical Image Anal. | 8 |
| 2022 | Multi-Class ASD Classification via Label Distribution Learning with Class-Shared and Class-Specific Decomposition
Jun Wang 0024, Fengyexin Zhang, Xiuyi Jia, Xin Wang 0084, Han Zhang 0002, Shihui Ying, Qian Wang 0001, Jun Shi 0004, Dinggang Shen |
Medical Image Anal. | 5 |
| 2022 | Multiview Feature Learning With Multiatlas-Based Functional Connectivity Networks for MCI DiagnosisabstractFunctional connectivity (FC) networks built from resting-state functional magnetic resonance imaging (rs-fMRI) has shown promising results for the diagnosis of Alzheimer's disease and its prodromal stage, that is, mild cognitive impairment (MCI). FC is usually estimated as a temporal correlation of regional mean rs-fMRI signals between any pair of brain regions, and these regions are traditionally parcellated with a particular brain atlas. Most existing studies have adopted a predefined brain atlas for all subjects. However, the constructed FC networks inevitably ignore the potentially important subject-specific information, particularly, the subject-specific brain parcellation. Similar to the drawback of the "single view" (versus the "multiview" learning) in medical image-based classification, FC networks constructed based on a single atlas may not be sufficient to reveal the underlying complicated differences between normal controls and disease-affected patients due to the potential bias from that particular atlas. In this study, we propose a multiview feature learning method with multiatlas-based FC networks to improve MCI diagnosis. Specifically, a three-step transformation is implemented to generate multiple individually specified atlases from the standard automated anatomical labeling template, from which a set of atlas exemplars is selected. Multiple FC networks are constructed based on these preselected atlas exemplars, providing multiple views of the FC network-based feature representations for each subject. We then devise a multitask learning algorithm for joint feature selection from the constructed multiple FC networks. The selected features are jointly fed into a support vector machine classifier for multiatlas-based MCI diagnosis. Extensive experimental comparisons are carried out between the proposed method and other competing approaches, including the traditional single-atlas-based method. The results indicate that our method significantly improves the MCI classification, demonstrating its promise in the brain connectome-based individualized diagnosis of brain diseases. Yu Zhang 0009, Han Zhang 0002, Ehsan Adeli-Mosabbeb, Xiaobo Chen 0001, Mingxia Liu 0001, Dinggang Shen |
IEEE Trans. Cybern. | 2 |
| 2022 | Divergent and Convergent Imaging Markers Between Bipolar and Unipolar Depression Based on Machine LearningabstractDistinguishing bipolar depression (BD) from unipolar depression (UD) based on symptoms only is challenging. Brain functional connectivity (FC), especially dynamic FC, has emerged as a promising approach to identify possible imaging markers for differentiating BD from UD. However, most of such studies utilized conventional FC and group-level statistical comparisons, which may not be sensitive enough to quantify subtle changes in the FC dynamics between BD and UD. In this paper, we present a more effective individualized differentiation model based on machine learning and the whole-brain "high-order functional connectivity (HOFC)" network. The HOFC, capturing temporal synchronization among the dynamic FC time series, a more complex "chronnectome" metric compared to the conventional FC, was used to classify 52 BD, 73 UD, and 76 healthycontrols (HC). We achieved a satisfactory accuracy (70.40%) in BD vs. UD differentiation. The resultant contributing features revealed the involvement of the coordinated flexible interactions among sensory (e.g., olfaction, vision, and audition), motor, and cognitive systems. Despite sharing common chronnectome of cognitive and affective impairments, BD and UD also demonstrated unique dynamic FC synchronization patterns. UD is more associated with abnormal visual-somatomotor inter-network connections, while BD is more related to impaired ventral attention-frontoparietal inter-network connections. Moreover, we found that the illness duration modulated the BD vs. UD separation, with the differentiation performance hampered by the secondary disease effects. Our findings suggest that BD and UD may have divergent and convergent neural substrates, which further expand our knowledge of the two different mental disorders. Huifeng Zhang, Zhen Zhou 0004, Chuangxin Wu, Meihui Qiu, Yueqi Huang, Ting Shen, Li-Ming Hsu, Han Zhang 0002, Dinggang Shen, Daihui Peng |
IEEE J. Biomed. Health Informatics | 12 |
| 2022 | Brain Connectivity Based Graph Convolutional Networks and Its Application to Infant Age PredictionabstractInfancy is a critical period for the human brain development, and brain age is one of the indices for the brain development status associated with neuroimaging data. The difference between the predicted age based on neuroimaging and the chronological age can provide an important early indicator of deviation from the normal developmental trajectory. In this study, we utilize the Graph Convolutional Network (GCN) to predict the infant brain age based on resting-state fMRI data. The brain connectivity obtained from rs-fMRI can be represented as a graph with brain regions as nodes and functional connections as edges. However, since the brain connectivity is a fully connected graph with features on edges, current GCN cannot be directly used for it is a node-based method for sparse graphs. Hence, we propose an edge-based Graph Path Convolution (GPC) method, which aggregates the information from different paths and can be naturally applied on dense graphs. We refer the whole model as Brain Connectivity Graph Convolutional Networks (BC-GCN). Further, two upgraded network structures are proposed by including the residual and attention modules, referred as BC-GCN-Res and BC-GCN-SE to emphasize the information of the original data and enhance influential channels. Moreover, we design a two-stage coarse-to-fine framework, which determines the age group first and then predicts the age using group-specific BC-GCN-SE models. To avoid accumulated errors from the first stage, a cross-group training strategy is adopted for the second stage regression models. We conduct experiments on infant fMRI scans from 6 to 811 days of age. The coarse-to-fine framework shows significant improvements when being applied to several models (reducing error over 10 days). Comparing with state-of-the-art methods, our proposed model BC-GCN-SE with coarse-to-fine framework reduces the mean absolute error of the prediction from >70 days to 49.9 days. The code is now available at https://github.com/SCUT-Xinlab/BC-GCN. Yu Li 0043, Xin Zhang 0013, Jingxin Nie, Ruiyan Fang, Xiangmin Xu 0001, Zhengwang Wu, Dan Hu 0004, Li Wang 0026, Han Zhang 0002, Weili Lin, Gang Li 0001 |
IEEE Trans. Medical Imaging | 10 |
| 2021 | Building Dynamic Hierarchical Brain Networks and Capturing Transient Meta-states for Early Mild Cognitive Impairment Diagnosis
Mianxin Liu, Han Zhang 0002, Feng Shi 0001, Dinggang Shen |
MICCAI (7) | 2 |
| 2020 | Auto-GAN: Self-Supervised Collaborative Learning for Medical Image SynthesisabstractIn various clinical scenarios, medical image is crucial in disease diagnosis and treatment. Different modalities of medical images provide complementary information and jointly helps doctors to make accurate clinical decision. However, due to clinical and practical restrictions, certain imaging modalities may be unavailable nor complete. To impute missing data with adequate clinical accuracy, here we propose a framework called self-supervised collaborative learning to synthesize missing modality for medical images. The proposed method comprehensively utilize all available information correlated to the target modality from multi-source-modality images to generate any missing modality in a single model. Different from the existing methods, we introduce an auto-encoder network as a novel, self-supervised constraint, which provides target-modality-specific information to guide generator training. In addition, we design a modality mask vector as the target modality label. With experiments on multiple medical image databases, we demonstrate a great generalization ability as well as specialty of our method compared with other state-of-the-arts. Bing Cao 0002, Han Zhang 0002, Nannan Wang 0001, Xinbo Gao 0001, Dinggang Shen |
AAAI | 2 |
| 2020 | A New Metric for Characterizing Dynamic Redundancy of Dense Brain Chronnectome and Its Application to Early Detection of Alzheimer's Disease
Maryam Ghanbari, Li-Ming Hsu, Zhen Zhou 0004, Amir Ghanbari, Zhanhao Mo, Pew-Thian Yap, Han Zhang 0002, Dinggang Shen |
MICCAI (7) | 7 |
| 2020 | Disentangled Intensive Triplet Autoencoder for Infant Functional Connectome Fingerprinting
Dan Hu 0004, Fan Wang 0023, Han Zhang 0002, Zhengwang Wu, Li Wang 0026, Weili Lin, Gang Li 0001, Dinggang Shen |
MICCAI (7) | 3 |
| 2020 | Construction of Spatiotemporal Infant Cortical Surface Functional Templates
Ying Huang 0007, Fan Wang 0023, Zhengwang Wu, Zengsi Chen, Han Zhang 0002, Li Wang 0026, Weili Lin, Dinggang Shen, Gang Li 0001 |
MICCAI (7) | 5 |
| 2020 | A Computational Framework for Dissociating Development-Related from Individually Variable Flexibility in Regional Modularity Assignment in Early Infancy
Mayssa Soussia, Xuyun Wen, Zhen Zhou 0004, Bing Jin, Tae-Eui Kam, Li-Ming Hsu, Zhengwang Wu, Gang Li 0001, Li Wang 0026, Islem Rekik, Weili Lin, Dinggang Shen, Han Zhang 0002 |
MICCAI (7) | 13 |
| 2020 | Disentangled-Multimodal Adversarial Autoencoder: Application to Infant Age Prediction With Incomplete Multimodal NeuroimagesabstractEffective fusion of structural magnetic resonance imaging (sMRI) and functional magnetic resonance imaging (fMRI) data has the potential to boost the accuracy of infant age prediction thanks to the complementary information provided by different imaging modalities. However, functional connectivity measured by fMRI during infancy is largely immature and noisy compared to the morphological features from sMRI, thus making the sMRI and fMRI fusion for infant brain analysis extremely challenging. With the conventional multimodal fusion strategies, adding fMRI data for age prediction has a high risk of introducing more noises than useful features, which would lead to reduced accuracy than that merely using sMRI data. To address this issue, we develop a novel model termed as disentangled-multimodal adversarial autoencoder (DMM-AAE) for infant age prediction based on multimodal brain MRI. Specifically, we disentangle the latent variables of autoencoder into common and specific codes to represent the shared and complementary information among modalities, respectively. Then, cross-reconstruction requirement and common-specific distance ratio loss are designed as regularizations to ensure the effectiveness and thoroughness of the disentanglement. By arranging relatively independent autoencoders to separate the modalities and employing disentanglement under cross-reconstruction requirement to integrate them, our DMM-AAE method effectively restrains the possible interference cross modalities, while realizing effective information fusion. Taking advantage of the latent variable disentanglement, a new strategy is further proposed and embedded into DMM-AAE to address the issue of incompleteness of the multimodal neuroimages, which can also be used as an independent algorithm for missing modality imputation. By taking six types of cortical morphometric features from sMRI and brain functional connectivity from fMRI as predictors, the superiority of the proposed DMM-AAE is validated on infant age (35 to 848 days after birth) prediction using incomplete multimodal neuroimages. The mean absolute error of the prediction based on DMM-AAE reaches 37.6 days, outperforming state-of-the-art methods. Generally, our proposed DMM-AAE can serve as a promising model for prediction with multimodal data. Dan Hu 0004, Han Zhang 0002, Zhengwang Wu, Fan Wang 0023, Li Wang 0026, J. Keith Smith, Weili Lin, Gang Li 0001, Dinggang Shen |
IEEE Trans. Medical Imaging | 2 |
| 2020 | Deep Learning of Static and Dynamic Brain Functional Networks for Early MCI DetectionabstractWhile convolutional neural network (CNN) has been demonstrating powerful ability to learn hierarchical spatial features from medical images, it is still difficult to apply it directly to resting-state functional MRI (rs-fMRI) and the derived brain functional networks (BFNs). We propose a novel CNN framework to simultaneously learn embedded features from BFNs for brain disease diagnosis. Since BFNs can be built by considering both static and dynamic functional connectivity (FC), we first decompose rs-fMRI into multiple static BFNs with modified independent component analysis. Then, the voxel-wise variability in dynamic FC is used to quantify BFN dynamics. A set of paired 3D images representing static/dynamic BFNs can be fed into 3D CNNs, from which we can hierarchically and simultaneously learn static/dynamic BFN features. As a result, the dynamic BFN features can complement static BFN features and, at the meantime, different BFNs can help each other toward a joint and better classification. We validate our method with a publicly accessible, large cohort of rs-fMRI dataset in early-stage mild cognitive impairment (eMCI) diagnosis, which is one of the most challenging problems to the clinicians. By comparing with a conventional method, our method shows significant diagnostic performance improvement by almost 10%. This result demonstrates the effectiveness of deep learning in preclinical Alzheimer's disease diagnosis, based on the complex and high-dimensional voxel-wise spatiotemporal patterns of the resting-state brain functional connectomics. The framework provides a new but intuitive way to fully exploit deeply embedded diagnostic features from rs-fMRI for a better-individualized diagnosis of various neurological diseases. Tae-Eui Kam, Han Zhang 0002, Zhicheng Jiao, Dinggang Shen |
IEEE Trans. Medical Imaging | 2 |
| 2020 | Deep Learning of Imaging Phenotype and Genotype for Predicting Overall Survival Time of Glioblastoma PatientsabstractGlioblastoma (GBM) is the most common and deadly malignant brain tumor. For personalized treatment, an accurate pre-operative prognosis for GBM patients is highly desired. Recently, many machine learning-based methods have been adopted to predict overall survival (OS) time based on the pre-operative mono- or multi-modal imaging phenotype. The genotypic information of GBM has been proven to be strongly indicative of the prognosis; however, this has not been considered in the existing imaging-based OS prediction methods. The main reason is that the tumor genotype is unavailable pre-operatively unless deriving from craniotomy. In this paper, we propose a new deep learning-based OS prediction method for GBM patients, which can derive tumor genotype-related features from pre-operative multimodal magnetic resonance imaging (MRI) brain data and feed them to OS prediction. Specifically, we propose a multi-task convolutional neural network (CNN) to accomplish both tumor genotype and OS prediction tasks jointly. As the network can benefit from learning tumor genotype-related features for genotype prediction, the accuracy of predicting OS time can be prominently improved. In the experiments, multimodal MRI brain dataset of 120 GBM patients, with as many as four different genotypic/molecular biomarkers, are used to evaluate our method. Our method achieves the highest OS prediction accuracy compared to other state-of-the-art methods. Zhenyu Tang 0002, Yuyun Xu, Lei Jin 0006, Abudumijiti Aibaidula, Zhicheng Jiao, Jinsong Wu 0002, Han Zhang 0002, Dinggang Shen |
IEEE Trans. Medical Imaging | 8 |
| 2019 | Decoding EEG by Visual-guided Deep Neural NetworksabstractDecoding visual stimuli from brain activities is an interdisciplinary study of neuroscience and computer vision. With the emerging of Human-AI Collaboration, Human-Computer Interaction, and the development of advanced machine learning models, brain decoding based on deep learning attracts more attention. Electroencephalogram (EEG) is a widely used neurophysiology tool. Inspired by the success of deep learning on image representation and neural decoding, we proposed a visual-guided EEG decoding method that contains a decoding stage and a generation stage. In the classification stage, we designed a visual-guided convolutional neural network (CNN) to obtain more discriminative representations from EEG, which are applied to achieve the classification results. In the generation stage, the visual-guided EEG features are input to our improved deep generative model with a visual consistence module to generate corresponding visual stimuli. With the help of our visual-guided strategies, the proposed method outperforms traditional machine learning methods and deep learning models in the EEG decoding task. Zhicheng Jiao, Haoxuan You, Fan Yang 0054, Xin Li 0079, Han Zhang 0002, Dinggang Shen |
IJCAI | 5 |
| 2019 | Deep Granular Feature-Label Distribution Learning for Neuroimaging-Based Infant Age Prediction
Dan Hu 0004, Han Zhang 0002, Zhengwang Wu, Weili Lin, Gang Li 0001, Dinggang Shen |
MICCAI (4) | 2 |
| 2019 | CoCa-GAN: Common-Feature-Learning-Based Context-Aware Generative Adversarial Network for Glioma Grading
Pu Huang 0001, Dengwang Li, Zhicheng Jiao, Dongming Wei, Guoshi Li, Qian Wang 0001, Han Zhang 0002, Dinggang Shen |
MICCAI (3) | 7 |
| 2019 | Early Development of Infant Brain Complex Network
Weixiong Jiang, Han Zhang 0002, Li-Ming Hsu, Dan Hu 0004, Guoshi Li, Ye Wu 0001, Dinggang Shen |
MICCAI (2) | 2 |
| 2019 | Dynamic Routing Capsule Networks for Mild Cognitive Impairment Diagnosis
Zhicheng Jiao, Pu Huang 0001, Tae-Eui Kam, Li-Ming Hsu, Ye Wu 0001, Han Zhang 0002, Dinggang Shen |
MICCAI (4) | 6 |
| 2019 | A Deep Learning Framework for Noise Component Detection from Resting-State Functional MRI
Tae-Eui Kam, Xuyun Wen, Bing Jin, Zhicheng Jiao, Li-Ming Hsu, Zhen Zhou 0004, Koji Yamashita, Sheng-Che Hung, Weili Lin, Han Zhang 0002, Dinggang Shen |
MICCAI (3) | 11 |
| 2019 | Identification of Abnormal Circuit Dynamics in Major Depressive Disorder via Multiscale Neural Modeling of Resting-State fMRI
Guoshi Li, Yanting Zheng, Ye Wu 0001, Pew-Thian Yap, Shijun Qiu, Han Zhang 0002, Dinggang Shen |
MICCAI (3) | 7 |
| 2019 | Pre-operative Overall Survival Time Prediction for Glioblastoma Patients Using Deep Learning on Both Imaging Phenotype and Genotype
Zhenyu Tang 0002, Yuyun Xu, Zhicheng Jiao, Lei Jin 0006, Abudumijiti Aibaidula, Jinsong Wu 0002, Qian Wang 0001, Han Zhang 0002, Dinggang Shen |
MICCAI (1) | 9 |
| 2019 | Automated Parcellation of the Cortex Using Structural Connectome Harmonics
Hoyt Patrick Taylor IV, Zhengwang Wu, Ye Wu 0001, Dinggang Shen, Han Zhang 0002, Pew-Thian Yap |
MICCAI (3) | 5 |
| 2019 | Multi-layer Temporal Network Analysis Reveals Increasing Temporal Reachability and Spreadability in the First Two Years of Life
Zhen Zhou 0004, Han Zhang 0002, Li-Ming Hsu, Weili Lin, Gang Pan 0001, Dinggang Shen |
MICCAI (3) | 2 |
| 2019 | Strength and similarity guided group-level brain functional network construction for MCI diagnosis
Yu Zhang 0009, Han Zhang 0002, Xiaobo Chen 0001, Mingxia Liu 0001, Xiaofeng Zhu 0001, Seong-Whan Lee, Dinggang Shen |
Pattern Recognit. | 2 |
| 2019 | Sparse Multiview Task-Centralized Ensemble Learning for ASD Diagnosis Based on Age- and Sex-Related Functional Connectivity PatternsabstractAutism spectrum disorder (ASD) is an age- and sex-related neurodevelopmental disorder that alters the brain's functional connectivity (FC). The changes caused by ASD are associated with different age- and sex-related patterns in neuroimaging data. However, most contemporary computer-assisted ASD diagnosis methods ignore the aforementioned age-/sex-related patterns. In this paper, we propose a novel sparse multiview task-centralized (Sparse-MVTC) ensemble classification method for image-based ASD diagnosis. Specifically, with the age and sex information of each subject, we formulate the classification as a multitask learning problem, where each task corresponds to learning upon a specific age/sex group. We also extract multiview features per subject to better reveal the FC changes. Then, in Sparse-MVTC learning, we select a certain central task and treat the rest as auxiliary tasks. By considering both task-task and view-view relationships between the central task and each auxiliary task, we can learn better upon the entire dataset. Finally, by selecting the central task, in turn, we are able to derive multiple classifiers for each task/group. An ensemble strategy is further adopted, such that the final diagnosis can be integrated for each subject. Our comprehensive experiments on the ABIDE database demonstrate that our proposed Sparse-MVTC ensemble learning can significantly outperform the state-of-the-art classification methods for ASD diagnosis. Jun Wang 0024, Qian Wang 0001, Han Zhang 0002, Jiawei Chen 0001, Shitong Wang 0001, Dinggang Shen |
IEEE Trans. Cybern. | 3 |
| 2018 | A Novel Deep Learning Framework on Brain Functional Networks for Early MCI Diagnosis
Tae-Eui Kam, Han Zhang 0002, Dinggang Shen |
MICCAI (3) | 2 |
| 2018 | Volume-Based Analysis of 6-Month-Old Infant Brain MRI for Autism Biomarker Identification and Early Diagnosis
Li Wang 0026, Gang Li 0001, Feng Shi 0001, Xiaohuan Cao, Chunfeng Lian, Dong Nie, Mingxia Liu 0001, Han Zhang 0002, Zhengwang Wu, Weili Lin, Dinggang Shen |
MICCAI (3) | 8 |
| 2018 | Deep Chronnectome Learning via Full Bidirectional Long Short-Term Memory Networks for MCI Diagnosis
Weizheng Yan, Han Zhang 0002, Jing Sui, Dinggang Shen |
MICCAI (3) | 2 |
| 2018 | Multi-layer Large-Scale Functional Connectome Reveals Infant Brain Developmental Patterns
Han Zhang 0002, Natalie Stanley, Peter J. Mucha, Weiyan Yin, Weili Lin, Dinggang Shen |
MICCAI (3) | 1 |
| 2018 | Multi-Label Nonlinear Matrix Completion With Transductive Multi-Task Feature Selection for Joint MGMT and IDH1 Status Prediction of Patient With High-Grade GliomasabstractThe O6-methylguanine-DNA methyltransferase (MGMT) promoter methylation and isocitrate dehydrogenase 1 (IDH1) mutation in high-grade gliomas (HGG) have proven to be the two important molecular indicators associated with better prognosis. Traditionally, the statuses of MGMT and IDH1 are obtained via surgical biopsy, which has limited their wider clinical implementation. Accurate presurgical prediction of their statuses based on preoperative multimodal neuroimaging is of great clinical value for a better treatment plan. Currently, the available data set associated with this study has several challenges, such as small sample size and complex, nonlinear (image) feature-to-(molecular) label relationship. To address these issues, we propose a novel multi-label nonlinear matrix completion (MNMC) model to jointly predict both MGMT and IDH1 statuses in a multi-task framework. Specifically, we first employ a nonlinear random Fourier feature mapping to improve the linear separability of the data, and then use transductive multi-task feature selection (performed in a nonlinearly transformed feature space) to refine the imputed soft labels, thus alleviating the overfitting problem caused by small sample size. We further design an optimization algorithm with a guaranteed convergence ability based on a block prox-linear method to solve the proposed MNMC model. Finally, by using a single-center, multimodal brain imaging and molecular pathology data set of HGG, we derive brain functional and structural connectomics features to jointly predict MGMT and IDH1 statuses. Results demonstrate that our proposed method outperforms the previously widely used single- and multi-task machine learning methods. This paper also shows the promise of utilizing brain connectomics for HGG prognosis in a non-invasive manner. Lei Chen 0011, Han Zhang 0002, Kim-Han Thung, Abudumijiti Aibaidula, Luyan Liu, Songcan Chen, Lei Jin 0006, Jinsong Wu 0002, Qian Wang 0001, LiangFu Zhou, Dinggang Shen |
IEEE Trans. Medical Imaging | 2 |
| 2017 | Multi-label Inductive Matrix Completion for Joint MGMT and IDH1 Status Prediction for Glioma Patients
Lei Chen 0011, Han Zhang 0002, Kim-Han Thung, Luyan Liu, Jinsong Wu 0002, Qian Wang 0001, Dinggang Shen |
MICCAI (2) | 2 |
| 2017 | Improving Functional MRI Registration Using Whole-Brain Functional Correlation Tensors
Yujia Zhou 0001, Pew-Thian Yap, Han Zhang 0002, Lichi Zhang, Qianjin Feng 0003, Dinggang Shen |
MICCAI (1) | 3 |
| 2016 | Ensemble Hierarchical High-Order Functional Connectivity Networks for MCI Classification
Xiaobo Chen 0001, Han Zhang 0002, Dinggang Shen |
MICCAI (2) | 2 |
| 2016 | Feature Selection Based on Iterative Canonical Correlation Analysis for Automatic Diagnosis of Parkinson's Disease
Luyan Liu, Qian Wang 0001, Ehsan Adeli-Mosabbeb, Lichi Zhang, Han Zhang 0002, Dinggang Shen |
MICCAI (2) | 5 |
| 2016 | Outcome Prediction for Patient with High-Grade Gliomas from Brain Functional and Structural Networks
Luyan Liu, Han Zhang 0002, Islem Rekik, Xiaobo Chen 0001, Qian Wang 0001, Dinggang Shen |
MICCAI (2) | 2 |
| 2016 | 3D Deep Learning for Multi-modal Imaging-Guided Survival Time Prediction of Brain Tumor Patients
Dong Nie, Han Zhang 0002, Ehsan Adeli-Mosabbeb, Luyan Liu, Dinggang Shen |
MICCAI (2) | 2 |
| 2016 | Correlation-Weighted Sparse Group Representation for Brain Network Construction in MCI Classification
Renping Yu, Han Zhang 0002, Xiaobo Chen 0001, Zhihui Wei, Dinggang Shen |
MICCAI (1) | 2 |
| 2016 | Reveal Consistent Spatial-Temporal Patterns from Dynamic Functional Connectivity for Autism Spectrum Disorder Identification
Yingying Zhu 0004, Xiaofeng Zhu 0001, Han Zhang 0002, Dinggang Shen, Guorong Wu 0001 |
MICCAI (1) | 3 |