We propose in this work a patch-based segmentation method relying on a label propagation framework. Based on image intensity similarities between the input image and a learning dataset, an original strategy which does not require any non-rigid registration is presented. Following recent developments in non-local image denoising, the similarity between images is represented by a weighted graph computed from intensity-based distance between patches. Experiments on simulated and in-vivo MR images show that the proposed method is very successful in providing automated human brain labeling.

A common solution to clinical MR imaging in the presence of large anatomical motion is to use fast multislice 2D studies to reduce slice acquisition time and provide clinically usable slice data. Recently, techniques have been developed which retrospectively correct large scale 3D motion between individual slices allowing the formation of a geometrically correct 3D volume from the multiple slice stacks. One challenge, however, in the final reconstruction process is the possibility of varying intensity bias in the slice data, typically due to the motion of the anatomy relative to imaging coils. As a result, slices which cover the same region of anatomy at different times may exhibit different sensitivity. This bias field inconsistency can induce artifacts in the final 3D reconstruction that can impact both clinical interpretation of key tissue boundaries and the automated analysis of the data. Here we describe a framework to estimate and correct the bias field inconsistency in each slice collectively across all motion corrupted image slices. Experiments using synthetic and clinical data show that the proposed method reduces intensity variability in tissues and improves the distinction between key tissue types.

We propose in this work a patch-based image labeling method relying on a label propagation framework. Based on image intensity similarities between the input image and an anatomy textbook, an original strategy which does not require any nonrigid registration is presented. Following recent developments in nonlocal image denoising, the similarity between images is represented by a weighted graph computed from an intensity-based distance between patches. Experiments on simulated and in vivo magnetic resonance images show that the proposed method is very successful in providing automated human brain labeling.

In recent years, postprocessing of fast multislice magnetic resonance imaging (MRI) to correct fetal motion has provided the first true 3-D MR images of the developing human brain in utero. Early approaches have used reconstruction based algorithms, employing a two-step iterative process, where slices from the acquired data are realigned to an approximate 3-D reconstruction of the fetal brain, which is then refined further using the improved slice alignment. This two step slice-to-volume process, although powerful, is computationally expensive in needing a 3-D reconstruction, and is limited in its ability to recover subvoxel alignment. Here, we describe an alternative approach which we term slice intersection motion correction (SIMC), that seeks to directly co-align multiple slice stacks by considering the matching structure along all intersecting slice pairs in all orthogonally planned slices that are acquired in clinical imaging studies. A collective update scheme for all slices is then derived, to simultaneously drive slices into a consistent match along their lines of intersection. We then describe a 3-D reconstruction algorithm that, using the final motion corrected slice locations, suppresses through-plane partial volume effects to provide a single high isotropic resolution 3-D image. The method is tested on simulated data with known motions and is applied to retrospectively reconstruct 3-D images from a range of clinically acquired imaging studies. The quantitative evaluation of the registration accuracy for the simulated data sets demonstrated a significant improvement over previous approaches. An initial application of the technique to studying clinical pathology is included, where the proposed method recovered up to 15 mm of translation and 30 degrees of rotation for individual slices, and produced full 3-D reconstructions containing clinically useful additional information not visible in the original 2-D slices.

A knowledge-based computer assisted decision (KB-CAD) system is a case-based reasoning system previously proposed for breast cancer detection. Although it was demonstrated to be very effective for the diagnostic problem, it was also shown to be computationally expensive due to the use of mutual information between images as a similarity measure. Here, the authors propose to alleviate this drawback by reducing the case-base size. The problem is formalized and a genetic algorithm is utilized as an optimization tool. Appropriate for the problem representation and operators are presented and discussed. A clinically relevant index of the area under the receiver operator characteristic curve is used as a measure of the system performance during the optimization and testing stages. Experimental results show that application of the proposed method can significantly reduce the case-base size while the classification performance of the KB-CAD, in fact, increases.

This paper presents an experimental study on the impact of low class prevalence on the neural network based classifier performance as measured using receiver operator characteristic (ROC) analysis. Two methods of dealing with the problem are investigated: oversampling and undersampling in the context of varying the class prevalence and the size of training datasets with uncorrelated and correlated features. The results show that the class imbalance can significantly decrease the classifier performance especially in the case of small training datasets. Furthermore, the oversampling method is shown to be more effective than the undersampling method in compensating the class imbalance. Statistically significant differences, however, are observed only in the cases with large total number of samples and very low prevalence.

Computer-assisted decision (CAD) systems are becoming increasingly popular for the diagnostic interpretation of radiologic images. These CAD systems often involve the stacked generalization of several different decision models. Combining decision models is a common meta-analysis strategy to improve upon the diagnostic performance of each individual model. This study investigates how different data handling schemes may affect the performance evaluation of CAD systems that rely on stacked generalization. The study is based on a multistage CAD system for the detection of masses in screening mammograms. The CAD system consists of a series of knowledge-based modules that operate at Level 0 capturing morphological as well as multiscale textural information. Then, the knowledge-based predictions are combined with a Level 1 classifier. The study shows that a leave-one-out sampling scheme appears to be an effective and relatively unbiased strategy for the estimation of the overall performance of a CAD system that is based on stacked generalization. However, extra caution should be placed on the complexity of the Level 1 combiner. When the available dataset is relatively small, a relatively simple learning system such as a backpropagation neural network with very few hidden nodes is preferable to avoid optimistically biased estimates of diagnostic performance.