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Gopalakrishnan Venkatesh

dblp:260/0138 · DBLP profile ↗
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4ranked-venue papers
1as first author
2since 2021 · last 2022
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 3 · 2 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 1 heaviest of 1, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › immunoinformatics
peptide-MHC binding prediction
0.412020
MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model · Bioinform. 2020

Methods — techniques the papers use, named apart from their topics

deep neural network · 0.4attention mechanism · 0.4
YearPublicationVenuePosition
2022 Hypernymy Detection for Low-resource Languages: A Study for Hindi, Bengali, and Amharic
abstract
Numerous attempts for hypernymy relation (e.g., dog “is-a” animal) detection have been made for resourceful languages like English, whereas efforts made for low-resource languages are scarce primarily due to lack of gold-standard datasets and suitable distributional models. Therefore, we introduce four gold-standard datasets for hypernymy detection for each of the two languages, namely, Hindi and Bengali, and two gold-standard datasets for Amharic. Another major contribution of this work is to prepare distributional thesaurus (DT) embeddings for all three languages using three different network embedding methods (DeepWalk, role2vec, and M-NMF) for the first time on these languages and to show their utility for hypernymy detection. Posing this problem as a binary classification task, we experiment with supervised classifiers like Support Vector Machine, Random Forest, and so on, and we show that these classifiers fed with DT embeddings can obtain promising results while evaluated against proposed gold-standard datasets, specifically in an experimental setup that counteracts lexical memorization. We further incorporate DT embeddings and pre-trained fastText embeddings together using two different hybrid approaches, both of which produce an excellent performance. Additionally, we validate our methodology on gold-standard English datasets as well, where we reach a comparable performance to state-of-the-art models for hypernymy detection.
Abhik Jana, Gopalakrishnan Venkatesh, Seid Muhie Yimam, Chris Biemann
ACM Trans. Asian Low Resour. Lang. Inf. Process.2
2021 Learning a Deep Reinforcement Learning Policy Over the Latent Space of a Pre-trained GAN for Semantic Age Manipulation
abstract
Learning a disentangled representation of the latent space has become one of the most fundamental problems studied in computer vision. Recently, many Generative Adversarial Networks (GANs) have shown promising results in generating high fidelity images. However, studies to understand the semantic layout of the latent space of pre-trained models are still limited. Several works train conditional GANs to generate faces with required semantic attributes. Unfortunately, in these attempts, the generated output is often not as photo-realistic as the unconditional state-of-the-art models. Besides, they also require large computational resources and specific datasets to generate high fidelity images. In our work, we have formulated a Markov Decision Process (MDP) over the latent space of a pre-trained GAN model to learn a conditional policy for semantic manipulation along specific attributes under defined identity bounds. Further, we have defined a semantic age manipulation scheme using a locally linear approximation over the latent space. Results show that our learned policy samples high fidelity images with required age alterations, while preserving the identity of the person.
Kumar Shubham, Gopalakrishnan Venkatesh, Reijul Sachdev, Akshi, Dinesh Babu Jayagopi, G. Srinivasaraghavan 0001
IJCNN2
2020 Automatic Compilation of Resources for Academic Writing and Evaluating with Informal Word Identification and Paraphrasing System
abstract
We present the first approach to automatically building resources for academic writing. The aim is to build a writing aid system that automatically edits a text so that it better adheres to the academic style of writing. On top of existing academic resources, such as the Corpus of Contemporary American English (COCA) academic Word List, the New Academic Word List, and the Academic Collocation List, we also explore how to dynamically build such resources that would be used to automatically identify informal or non-academic words or phrases. The resources are compiled using different generic approaches that can be extended for different domains and languages. We describe the evaluation of resources with a system implementation. The system consists of an informal word identification (IWI), academic candidate paraphrase generation, and paraphrase ranking components. To generate candidates and rank them in context, we have used the PPDB and WordNet paraphrase resources. We use the Concepts in Context (CoInCO) “All-Words” lexical substitution dataset both for the informal word identification and paraphrase generation experiments. Our informal word identification component achieves an F-1 score of 82%, significantly outperforming a stratified classifier baseline. The main contribution of this work is a domain-independent methodology to build targeted resources for writing aids.
Seid Muhie Yimam, Gopalakrishnan Venkatesh, John Lee 0001, Chris Biemann
LREC2
2020 MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model
abstract
MOTIVATION: Accurate prediction of binding between a major histocompatibility complex (MHC) allele and a peptide plays a major role in the synthesis of personalized cancer vaccines. The immune system struggles to distinguish between a cancerous and a healthy cell. In a patient suffering from cancer who has a particular MHC allele, only those peptides that bind with the MHC allele with high affinity, help the immune system recognize the cancerous cells. RESULTS: MHCAttnNet is a deep neural model that uses an attention mechanism to capture the relevant subsequences of the amino acid sequences of peptides and MHC alleles. It then uses this to accurately predict the MHC-peptide binding. MHCAttnNet achieves an AUC-PRC score of 94.18% with 161 class I MHC alleles, which outperforms the state-of-the-art models for this task. MHCAttnNet also achieves a better F1-score in comparison to the state-of-the-art models while covering a larger number of class II MHC alleles. The attention mechanism used by MHCAttnNet provides a heatmap over the amino acids thus indicating the important subsequences present in the amino acid sequence. This approach also allows us to focus on a much smaller number of relevant trigrams corresponding to the amino acid sequence of an MHC allele, from 9251 possible trigrams to about 258. This significantly reduces the number of amino acid subsequences that need to be clinically tested. AVAILABILITY AND IMPLEMENTATION: The data and source code are available at https://github.com/gopuvenkat/MHCAttnNet.
Gopalakrishnan Venkatesh, Aayush Grover, G. Srinivasaraghavan 0001, Shrisha Rao 0001
Bioinform.1