Cell detection is a fundamental task in computational pathology that can be used for extracting high-level medical information from whole-slide images. For accurate cell detection, pathologists often zoom out to understand the tissue-level structures and zoom in to classify cells based on their morphology and the surrounding context. However, there is a lack of efforts to reflect such behaviors by pathologists in the cell detection models, mainly due to the lack of datasets containing both cell and tissue annotations with overlapping regions. To overcome this limitation, we propose and publicly release OCELOT, a dataset purposely dedicated to the study of cell-tissue relationships for cell detection in histopathology. OCELOT provides overlapping cell and tissue annotations on images acquired from multiple organs. Within this setting, we also propose multi-task learning approaches that benefit from learning both cell and tissue tasks simultaneously. When compared against a model trained only for the cell detection task, our proposed approaches improve cell detection performance on 3 datasets: proposed OCELOT, public TIGER, and internal CARP datasets. On the OCELOT test set in particular, we show up to 6.79 improvement in F1-score. We believe the contributions of this paper, including the release of the OCELOT dataset at https://lunit-io.github.io/research/publications/OCELOT are a crucial starting point toward the important research direction of incorporating cell-tissue relationships in computation pathology.

Meta-learning of shared initialization parameters has shown to be highly effective in solving few-shot learning tasks. However, extending the framework to many-shot scenarios, which may further enhance its practicality, has been relatively overlooked due to the technical difficulties of meta-learning over long chains of inner-gradient steps. In this paper, we first show that allowing the meta-learners to take a larger number of inner gradient steps better captures the structure of heterogeneous and large-scale task distributions, thus results in obtaining better initialization points. Further, in order to increase the frequency of meta-updates even with the excessively long inner-optimization trajectories, we propose to estimate the required shift of the task-specific parameters with respect to the change of the initialization parameters. By doing so, we can arbitrarily increase the frequency of meta-updates and thus greatly improve the meta-level convergence as well as the quality of the learned initializations. We validate our method on a heterogeneous set of large-scale tasks, and show that the algorithm largely outperforms the previous first-order meta-learning methods in terms of both generalization performance and convergence, as well as multi-task learning and fine-tuning baselines.

Regularization and transfer learning are two popular techniques to enhance model generalization on unseen data, which is a fundamental problem of machine learning. Regularization techniques are versatile, as they are task- and architecture-agnostic, but they do not exploit a large amount of data available. Transfer learning methods learn to transfer knowledge from one domain to another, but may not generalize across tasks and architectures, and may introduce new training cost for adapting to the target task. To bridge the gap between the two, we propose a transferable perturbation, MetaPerturb, which is meta-learned to improve generalization performance on unseen data. MetaPerturb is implemented as a set-based lightweight network that is agnostic to the size and the order of the input, which is shared across the layers. Then, we propose a meta-learning framework, to jointly train the perturbation function over heterogeneous tasks in parallel. As MetaPerturb is a set-function trained over diverse distributions across layers and tasks, it can generalize to heterogeneous tasks and architectures. We validate the efficacy and generality of MetaPerturb trained on a specific source domain and architecture, by applying it to the training of diverse neural architectures on heterogeneous target datasets against various regularizers and fine-tuning. The results show that the networks trained with MetaPerturb significantly outperform the baselines on most of the tasks and architectures, with a negligible increase in the parameter size and no hyperparameters to tune.