Deep research agents have attracted growing attention for their potential to orchestrate multi-stage research workflows, spanning literature synthesis, methodological design, and empirical verification. Despite these strides, evaluating their research capability faithfully is rather challenging due to the difficulty of collecting frontier research questions that genuinely capture researchers’ attention and intellectual curiosity. To address this gap, we introduce DeepResearch Arena, a benchmark grounded in academic seminars that capture rich expert discourse and interaction, better reflecting real-world research environments and reducing the risk of data leakage. To automatically construct DeepResearch Arena, we propose a Multi-Agent Hierarchical Task Generation (MAHTG) system that extracts research-worthy inspirations from seminar transcripts. The MAHTG system further translates research-worthy inspirations into high-quality research tasks, ensuring the traceability of research task formulation while filtering noise. With the MAHTG system, we curate DeepResearch Arena with over 10,000 high-quality research tasks from over 200 academic seminars, spanning 12 disciplines, such as literature, history, and science. Our extensive evaluation shows that DeepResearch Arena presents substantial challenges for current state-of-the-art agents, with clear performance gaps observed across different models.

Positional Encodings (PEs) are essential for injecting structural information into Graph Neural Networks (GNNs), particularly Graph Transformers, yet their empirical impact remains insufficiently understood. We introduce a unified benchmarking framework that decouples PEs from architectural choices, enabling a fair comparison across 8 GNN and Transformer models, 9 PEs, and 10 synthetic and real-world datasets. Across more than 500 model-PE-dataset configurations, we find that commonly used expressiveness proxies, including Weisfeiler-Lehman distinguishability, do not reliably predict downstream performance. In particular, highly expressive PEs frequently fail to improve, and can even degrade performance on real-world tasks. At the same time, we identify several simple and previously overlooked model-PE combinations that match or outperform recent state-of-the-art methods. Our results demonstrate the strong task-dependence of PEs and underscore the need for empirical validation beyond theoretical expressiveness. To support reproducible research, we release an open-source benchmarking framework for evaluating PEs for graph learning tasks.

Untethered capsules are capable of entering the gastrointestinal (GI) tract and collecting fluid samples containing microbial communities from specific locations, facilitating the study of chronic diseases. However, existing sampling capsules are designed for single-site sampling, making it challenging to gather samples from multiple targets. This paper reports a magnetic-driven capsule for multiple sampling within the GI tract and an on-demand magnetic-triggered fluid sampling strategy. The capsule consists of a body, a magnetic-triggered negative pressure unit, and a reservoir unit. Composed of an elastic membrane and Magnet I, the negative pressure unit controls pressure change inside the capsule cavity on demand to pump the sample by switching the magnetic field, while the embedded Magnet I also enables real-time magnetic localization for regional targeting and position tracking. The reservoir unit integrates three sampling papers for fluid absorption, two waterproof layers that maintain contamination levels below 25% to ensure reliable multi-site sampling, and a rotating arm embedded with Magnet II for posture adjustment of the sampling paper. The pumping and storage performance of the capsule was systematically evaluated and optimized. Meanwhile, the capsule, actuated by an external magnetic field, was evaluated for its active locomotion performance. Finally, the feasibility of using the capsule to perform active navigation and multi-target sampling in a porcine intestine was validated viaex vivoexperiments.

MOTIVATION: Deep learning has deeply influenced protein science, enabling breakthroughs in predicting protein properties, higher-order structures, and molecular interactions. RESULTS: This article introduces DeepProtein, a comprehensive and user-friendly deep learning library tailored for protein-related tasks. It enables researchers to seamlessly address protein data with cutting-edge deep learning models. To assess model performance, we establish a benchmark that evaluates different deep learning architectures across multiple protein-related tasks, including protein function prediction, subcellular localization prediction, protein-protein interaction prediction, and protein structure prediction. Furthermore, we introduce DeepProt-T5, a series of fine-tuned Prot-T5-based models that achieve state-of-the-art performance on four benchmark tasks, while demonstrating competitive results on six of others. Comprehensive documentation and tutorials are available which could ensure accessibility and support reproducibility. AVAILABILITY AND IMPLEMENTATION: Built upon the widely used drug discovery library DeepPurpose, DeepProtein is publicly available at https://github.com/jiaqingxie/DeepProtein.