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Krisztian Adam

dblp:276/0996 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2020
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
biological data visualization
0.412020
DNA Readout Viewer (DRV): visualization of specificity determining patterns of protein-binding DNA segments · Bioinform. 2020
Bioinformatics and computational biology › sequence analysis › sequence feature extraction
DNA sequence representation
0.412020
DNA Readout Viewer (DRV): visualization of specificity determining patterns of protein-binding DNA segments · Bioinform. 2020
Bioinformatics and computational biology › protein analysis › protein bioinformatics
protein-DNA interaction
0.412020
DNA Readout Viewer (DRV): visualization of specificity determining patterns of protein-binding DNA segments · Bioinform. 2020

Methods — techniques the papers use, named apart from their topics

functional group visualization · 0.4DNA descriptor analysis · 0.4
YearPublicationVenuePosition
2020 DNA Readout Viewer (DRV): visualization of specificity determining patterns of protein-binding DNA segments
abstract
SUMMARY: The sequence specific recognition of DNA by regulatory proteins typically occurs by establishing hydrogen bonds and non-bonded contacts between chemical sub-structures of nucleotides and amino acids forming the compatible interacting surfaces. The recognition process is also influenced by the physicochemical and conformational character of the target oligonucleotide motif. Although the role of these mechanisms in DNA-protein interactions is well-established, bioinformatical methods rarely address them directly, instead binding specificity is mostly assessed at nucleotide level. DNA Readout Viewer (DRV) aims to provide a novel DNA representation, facilitating in-depth view into these mechanisms by the concurrent visualization of functional groups and a diverse collection of DNA descriptors. By applying its intuitive representation concept for various DNA recognition related visualization tasks, DRV can contribute to unravelling the binding specificity factors of DNA-protein interactions. AVAILABILITY AND IMPLEMENTATION: DRV is freely available at https://drv.brc.hu. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Krisztian Adam, Zoltan Gyorgypal, Zoltan Hegedus
Bioinform.1