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Yinan Shen

dblp:276/8961 · DBLP profile ↗
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2ranked-venue papers
2as first author
1since 2021 · last 2025
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Theoretical computer science
1 paper
Mathematical optimization · 100%
Artificial intelligence
1 paper
Probabilistic and Bayesian machine learning · 77% Learning theory · 23%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Probabilistic and Bayesian machine learning › statistical inference › regression
quantile regression
0.912025
Online Quantile Regression · J. Mach. Learn. Res. 2025
Mathematical optimization
stochastic optimization
0.912025
Online Quantile Regression · J. Mach. Learn. Res. 2025
Mathematical optimization › stochastic optimization › stochastic gradient methods
stochastic subgradient descent
0.912025
Online Quantile Regression · J. Mach. Learn. Res. 2025
Machine learning › Learning theory › online learning
regret bounds
0.312025
Online Quantile Regression · J. Mach. Learn. Res. 2025

Methods — techniques the papers use, named apart from their topics

stochastic subgradient descent · 1.7concentration inequalities · 1.7
YearPublicationVenuePosition
2025 Online Quantile Regression
abstract
This paper addresses the challenge of integrating sequentially arriving data into the quantile regression framework, where the number of features may increase with the number of observations, the time horizon is unknown, and memory resources are limited. Unlike least squares and robust regression methods, quantile regression models different segments of the conditional distribution, thereby capturing heterogeneous relationships between predictors and responses and providing a more comprehensive view of the underlying stochastic structure. We employ stochastic sub-gradient descent to minimize the empirical check loss and analyze its statistical properties and regret behavior. Our analysis reveals a subtle interplay between updating iterates based on individual observations and on batches of observations, highlighting distinct regularity characteristics in each setting. The proposed method guarantees long-term optimal estimation performance regardless of the chosen update strategy. Our contributions extend existing literature by establishing exponential-type concentration inequalities and by achieving optimal regret and error rates that exhibit only short-term sensitivity to initialization. A key insight from our study lies in the refined statistical analysis showing that properly chosen stepsize schemes substantially mitigate the influence of initial errors on subsequent estimation and regret. This result underscores the robustness of stochastic sub-gradient descent in managing initial uncertainties and affirms its effectiveness in sequential learning settings with unknown horizons and data-dependent sample sizes. Furthermore, when the initial estimation error is well-controlled, our analysis reveals a trade-off between short-term error reduction and long-term optimality. For completeness, we also discuss the squared loss case and outline appropriate update schemes, whose analysis requires additional care. Extensive simulation studies corroborate our theoretical findings.
Yinan Shen, Dong Xia, Wen-Xin Zhou
J. Mach. Learn. Res.1
2020 Critical evaluation of web-based prediction tools for human protein subcellular localization
abstract
Human protein subcellular localization has an important research value in biological processes, also in elucidating protein functions and identifying drug targets. Over the past decade, a number of protein subcellular localization prediction tools have been designed and made freely available online. The purpose of this paper is to summarize the progress of research on the subcellular localization of human proteins in recent years, including commonly used data sets proposed by the predecessors and the performance of all selected prediction tools against the same benchmark data set. We carry out a systematic evaluation of several publicly available subcellular localization prediction methods on various benchmark data sets. Among them, we find that mLASSO-Hum and pLoc-mHum provide a statistically significant improvement in performance, as measured by the value of accuracy, relative to the other methods. Meanwhile, we build a new data set using the latest version of Uniprot database and construct a new GO-based prediction method HumLoc-LBCI in this paper. Then, we test all selected prediction tools on the new data set. Finally, we discuss the possible development directions of human protein subcellular localization. Availability: The codes and data are available from http://www.lbci.cn/syn/.
Yinan Shen, Yijie Ding, Jijun Tang, Quan Zou 0001, Fei Guo 0001
Briefings Bioinform.1