Graph neural networks (GNNs) have become a workhorse approach for learning from data defined over irregular domains, typically by implicitly assuming that the data structure is represented by a homophilic graph. However, recent works have revealed that many relevant applications involve heterophilic data where the performance of GNNs can be notably compromised. To address this challenge, we present a simple yet effective architecture designed to mitigate the limitations of the homophily assumption. The proposed architecture reinterprets the role of graph filters in convolutional GNNs, resulting in a more general architecture while incorporating a stronger inductive bias than GNNs based on filter banks. The proposed convolutional layer enhances the expressive capacity of the architecture enabling it to learn from both homophilic and heterophilic data and preventing the issue of oversmoothing. From a theoretical standpoint, we show that the proposed architecture is permutation equivariant. Finally, we show that the proposed GNNs compares favorably relative to several state-of-the-art baselines in both homophilic and heterophilic datasets, showcasing its promising potential.

This paper introduces a probabilistic approach for tracking the dynamics of unweighted and directed graphs using state-space models (SSMs). Unlike conventional topology inference methods that assume static graphs and generate point-wise estimates, our method accounts for dynamic changes in the network structure over time. We model the network at each timestep as the state of the SSM, and use observations to update beliefs that quantify the probability of the network being in a particular state. Then, by considering the dynamics of transition and observation models through the update and prediction steps, respectively, the proposed method can incorporate the information of real-time graph signals into the beliefs. These beliefs provide a probability distribution of the network at each timestep, being able to provide both an estimate for the network and the uncertainty it entails. Our approach is evaluated through experiments with synthetic and real-world networks. The results demonstrate that our method effectively estimates network states and accounts for the uncertainty in the data, outperforming traditional techniques such as recursive least squares.

Graphons, as limit objects of dense graph sequences, play a central role in the statistical analysis of network data. However, existing graphon estimation methods often struggle with scalability to large networks and resolution-independent approximation, due to their reliance on estimating latent variables or costly metrics such as the Gromov-Wasserstein distance. In this work, we propose a novel, scalable graphon estimator that directly recovers the graphon via moment matching, leveraging implicit neural representations (INRs). Our approach avoids latent variable modeling by training an INR--mapping coordinates to graphon values--to match empirical subgraph counts (i.e., moments) from observed graphs. This direct estimation mechanism yields a polynomial-time solution and crucially sidesteps the combinatorial complexity of Gromov-Wasserstein optimization. Building on foundational results, we establish a theoretical guarantee: when the observed subgraph motifs sufficiently represent those of the true graphon (a condition met with sufficiently large or numerous graph samples), the estimated graphon achieves a provable upper bound in cut distance from the ground truth. Additionally, we introduce MomentMixup, a data augmentation technique that performs mixup in the moment space to enhance graphon-based learning. Our graphon estimation method achieves strong empirical performance--demonstrating high accuracy on small graphs and superior computational efficiency on large graphs--outperforming state-of-the-art scalable estimators in 75\% of benchmark settings and matching them in the remaining cases. Furthermore, MomentMixup demonstrated improved graph classification accuracy on the majority of our benchmarks.

Node features bolster graph-based learning when exploited jointly with network structure. However, a lack of nodal attributes is prevalent in graph data. We present a framework to recover completely missing node features for a set of graphs, where we only know the signals of a subset of graphs. Our approach incorporates prior information from both graph topology and existing nodal values. We demonstrate an example implementation of our framework where we assume that node features depend on local graph structure. Missing nodal values are estimated by aggregating known features from the most similar nodes. Similarity is measured through a node embedding space that preserves local topological features, which we train using a Graph AutoEncoder. We empirically show not only the accuracy of our feature estimation approach but also its value for downstream graph classification. Our success embarks on and implies the need to emphasize the relationship between node features and graph structure in graph-based learning.

Blind deconvolution over graphs involves using (observed) output graph signals to obtain both the inputs (sources) as well as the filter that drives (models) the graph diffusion process. This is an ill-posed problem that requires additional assumptions, such as the sources being sparse, to be solvable. This paper addresses the blind deconvolution problem in the presence of imperfect graph information, where the observed graph is a perturbed version of the (unknown) true graph. While not having perfect knowledge of the graph is arguably more the norm than the exception, the body of literature on this topic is relatively small. This is partly due to the fact that translating the uncertainty about the graph topology to standard graph signal processing tools (e.g. eigenvectors or polynomials of the graph) is a challenging endeavor. To address this limitation, we propose an optimization-based estimator that solves the blind identification in the vertex domain, aims at estimating the inverse of the generating filter, and accounts explicitly for additive graph perturbations. Preliminary numerical experiments showcase the effectiveness and potential of the proposed algorithm.

Interest in bilevel optimization has grown in recent years, partially due to its relevance for challenging machine-learning problems. Several exciting recent works have been centered around developing efficient gradient-based algorithms that can solve bilevel optimization problems with provable guarantees. However, the existing literature mainly focuses on bilevel problems either without constraints, or featuring only simple constraints that do not couple variables across the upper and lower levels, excluding a range of complex applications. Our paper studies this challenging but less explored scenario and develops a (fully) first-order algorithm, which we term BLOCC, to tackle BiLevel Optimization problems with Coupled Constraints. We establish rigorous convergence theory for the proposed algorithm and demonstrate its effectiveness on two well-known real-world applications - support vector machine (SVM) - based model training and infrastructure planning in transportation networks.