EDBT 2026 Demo / reviewers in the wild / expert
Clara I. Sánchez
dblp:28/4455
· DBLP profile ↗
31ranked-venue papers
3as first author
10since 2021 · last 2026
0000-0001-9787-8319ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 26 · 3 first-author · 6 since 2021Artificial intelligence and machine learning · 6 · 4 since 2021Graphics, computer vision, multimedia, augmented reality and games · 4 · 1 first-author · 1 since 2021Human-computer interaction and ubiquitous computing · 1
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Understanding AI Trustworthiness: A Scoping Review of AIES & FAccT ArticlesabstractBackground: Trustworthy AI serves as a foundational pillar for two major AI ethics conferences: AIES and FAccT. Current research often adopts techno-centric approaches, focusing primarily on technical attributes such as accuracy, reliability, robustness, and fairness, while overlooking the sociotechnical dimensions critical to understanding AI trustworthiness in real-world contexts. Objectives: This scoping review aims to examine how the AIES and FAccT communities conceptualize, measure, and validate AI trustworthiness, identifying major gaps and opportunities for advancing a holistic understanding of trustworthy AI systems. Methods: We conduct a scoping review of the AIES and FAccT conference proceedings to date, systematically analyzing how trustworthiness is defined, operationalized, and applied across different research domains. Our analysis focuses on conceptualization approaches, measurement methods, verification and validation techniques, application areas, and underlying values. Results: While significant progress has been made in defining technical attributes such as transparency, accountability, and robustness, our findings reveal critical gaps. Current research often predominantly emphasizes technical precision at the expense of social and ethical considerations. The sociotechnical nature of AI systems remains less explored and trustworthiness emerges as a contested concept shaped by those with the power to define it. Conclusions: An interdisciplinary approach combining technical rigor with social, cultural, and institutional considerations is essential for advancing trustworthy AI. We propose actionable measures for the AI ethics community to adopt holistic frameworks that genuinely address the complex interplay between AI systems and society, ultimately promoting responsible technological development that benefits all stakeholders. Siddharth Mehrotra, Jin Huang 0010, Xuelong Fu, Roel Dobbe, Clara I. Sánchez, Maarten de Rijke |
J. Artif. Intell. Res. | 5 |
| 2025 | Real-time placental vessel segmentation in fetoscopic laser surgery for Twin-to-Twin Transfusion SyndromeabstractTwin-to-Twin Transfusion Syndrome (TTTS) is a rare condition that affects about 15% of monochorionic pregnancies, in which identical twins share a single placenta. Fetoscopic laser photocoagulation (FLP) is the standard treatment for TTTS, which significantly improves the survival of fetuses. The aim of FLP is to identify abnormal connections between blood vessels and to laser ablate them in order to equalize blood supply to both fetuses. However, performing fetoscopic surgery is challenging due to limited visibility, a narrow field of view, and significant variability among patients and domains. In order to enhance the visualization of placental vessels during surgery, we propose TTTSNet, a network architecture designed for real-time and accurate placental vessel segmentation. Our network architecture incorporates a novel channel attention module and multi-scale feature fusion module to precisely segment tiny placental vessels. To address the challenges posed by FLP-specific fiberscope and amniotic sac-based artifacts, we employed novel data augmentation techniques. These techniques simulate various artifacts, including laser pointer, amniotic sac particles, and structural and optical fiber artifacts. By incorporating these simulated artifacts during training, our network architecture demonstrated robust generalizability. We trained TTTSNet on a publicly available dataset of 2060 video frames from 18 independent fetoscopic procedures and evaluated it on a multi-center external dataset of 24 in-vivo procedures with a total of 2348 video frames. Our method achieved significant performance improvements compared to state-of-the-art methods, with a mean Intersection over Union of 78.26% for all placental vessels and 73.35% for a subset of tiny placental vessels. Moreover, our method achieved 172 and 152 frames per second on an A100 GPU, and Clara AGX, respectively. This potentially opens the door to real-time application during surgical procedures. The code is publicly available at https://github.com/SanoScience/TTTSNet. Szymon Plotka, Tomasz Szczepanski, Paula Szenejko, Przemyslaw Korzeniowski, Jesús Rodriguez Calvo, Asma Khalil, Alireza Shamshirsaz, Robert Brawura-Biskupski-Samaha, Ivana Isgum, Clara I. Sánchez, Arkadiusz Sitek |
Medical Image Anal. | 10 |
| 2024 | Recurrent Task Specialization Network for Segmentation-aided Vascular Landmarks Detection in Retinal ImagesabstractThe detection of vessel crossings and bifurcations in eye fundus images plays an important role in numerous applications, including the diagnosis of ophthalmic and systemic diseases, biometric authentication, and retinal image registration. Nowadays, deep neural networks are successfully used for the detection of these vascular landmarks. However, existing approaches could be limited by the lack of understanding of the retinal anatomy and the intricate retinal vasculature. In this context, we propose Recurrent Task Specialization, a novel approach that performs a recurrent forward process with two forward passes through the same network, each of them specialized in a different task. We apply the proposed approach to the detection of vessel crossings and bifurcations in the retina via heatmap regression, using the segmentation of the retinal vasculature as the auxiliary task. To validate our proposal, we perform comparative experiments on two public datasets, including common alternatives to leverage auxiliary tasks, such as standard multi-task learning and transfer learning. The proposed approach outperforms existing alternatives and achieves the best results in the state-of-the-art for the detection of vessel crossings and bifurcations in retinal images. In this regard, our experiments demonstrate the potential of the proposed approach to improve the performance of deep neural networks in applications where adequate auxiliary tasks can be constructed. Álvaro S. Hervella, José Rouco, Jorge Novo, Clara I. Sánchez, Marcos Ortega 0001 |
ECAI | 4 |
| 2024 | 3D Point Cloud Analysis via Transformer-Based Graph Learning for Multiple Sclerosis Screening in OCT ImagesabstractMultiple Sclerosis (MS), the leading cause of non-traumatic neurological impairment in young adults, manifests morphological changes in the retina observable in Optical Coherence Tomography (OCT) images. These changes in the Retinal Nerve Fibre Layer (RNFL) and the Ganglion Cell Layer - Bruch’s Membrane (GCL-BM) serve as potential computational biomarkers for MS. In this work, we propose a transformer-based graph learning approach for analyzing 3D point clouds generated from RNFL and GCL-BM contours, marking a first in the application of geometric deep learning (GDL) to MS diagnosis via OCT scans. Our proposal, tailored for efficiency, synergizes the global contextual strengths of transformers with the detailed, structure-aware capabilities of graph neural networks. Such integration allows for the nuanced analysis of complex retinal structures, significantly boosting the precision of MS detection by uncovering patterns not discernible to the human eye. Additionally, we conducted a comprehensive study on the optimal downsampling size of input 3D point clouds, ensuring efficient data processing without compromising diagnostic accuracy. Our optimal configuration achieved a test F1-Score of 0.88, using only 4.0% of total 3D points, showcasing the effectiveness of our method despite the higher computational demands compared to less complex, albeit less precise, configurations. These promising results are the first in the study of 3D analysis and transformer-based geometric deep learning for MS screening based on OCT images, which are revolutionizing neurophtalmological research. Lorena Álvarez-Rodríguez, Iván García Prego, Joaquim de Moura, Ana Pueyo, Elisa Vilades, Elena Garcia-Martin, Clara I. Sánchez, Jorge Novo, Marcos Ortega 0001 |
KES | 7 |
| 2024 | Fully automatic deep convolutional approaches for the screening of neurodegeneratives diseases using multi-view OCT imagesabstractThe prevalence of neurodegenerative diseases (NDDs) such as Alzheimer's (AD), Parkinson's (PD), Essential tremor (ET), and Multiple Sclerosis (MS) is increasing alongside the aging population. Recent studies suggest that these disorders can be identified through retinal imaging, allowing for early detection and monitoring via Optical Coherence Tomography (OCT) scans. This study is at the forefront of research, pioneering the application of multi-view OCT and 3D information to the neurological diseases domain. Our methodology consists of two main steps. In the first one, we focus on the segmentation of the retinal nerve fiber layer (RNFL) and a class layer grouping between the ganglion cell layer and Bruch's membrane (GCL-BM) in both macular and optic disc OCT scans. These are the areas where changes in thickness serve as a potential indicator of NDDs. The second phase is to select patients based on information about the retinal layers. We explore how the integration of both views (macula and optic disc) improves each screening scenario: Healthy Controls (HC) vs. NDD, AD vs. NDD, ET vs. NDD, MS vs. NDD, PD vs. NDD, and a final multi-class approach considering all four NDDs. For the segmentation task, we obtained satisfactory results for both 2D and 3D approaches in macular segmentation, in which 3D performed better due to the inclusion of depth and cross-sectional information. As for the optic disc view, transfer learning did not improve the metrics over training from scratch, but it did provide a faster training. As for screening, 3D computational biomarkers provided better results than 2D ones, and multi-view methods were usually better than the single-view ones. Regarding separability among diseases, MS and PD were the ones that provided better results in their screening approaches, being also the most represented classes. In conclusion, our methodology has been successfully validated with an extensive experimentation of configurations, techniques and OCT views, becoming the first multi-view analysis that merges data from both macula-centered and optic disc-centered perspectives. Besides, it is also the first effort to examine key retinal layers across four major NDDs within the framework of pathological screening. Lorena Álvarez-Rodríguez, Ana Pueyo, Joaquim de Moura, Elisa Vilades, Elena Garcia-Martin, Clara I. Sánchez, Jorge Novo, Marcos Ortega 0001 |
Artif. Intell. Medicine | 6 |
| 2024 | Uncertainty-aware multiple-instance learning for reliable classification: Application to optical coherence tomographyabstractDeep learning classification models for medical image analysis often perform well on data from scanners that were used to acquire the training data. However, when these models are applied to data from different vendors, their performance tends to drop substantially. Artifacts that only occur within scans from specific scanners are major causes of this poor generalizability. We aimed to enhance the reliability of deep learning classification models using a novel method called Uncertainty-Based Instance eXclusion (UBIX). UBIX is an inference-time module that can be employed in multiple-instance learning (MIL) settings. MIL is a paradigm in which instances (generally crops or slices) of a bag (generally an image) contribute towards a bag-level output. Instead of assuming equal contribution of all instances to the bag-level output, UBIX detects instances corrupted due to local artifacts on-the-fly using uncertainty estimation, reducing or fully ignoring their contributions before MIL pooling. In our experiments, instances are 2D slices and bags are volumetric images, but alternative definitions are also possible. Although UBIX is generally applicable to diverse classification tasks, we focused on the staging of age-related macular degeneration in optical coherence tomography. Our models were trained on data from a single scanner and tested on external datasets from different vendors, which included vendor-specific artifacts. UBIX showed reliable behavior, with a slight decrease in performance (a decrease of the quadratic weighted kappa (κw) from 0.861 to 0.708), when applied to images from different vendors containing artifacts; while a state-of-the-art 3D neural network without UBIX suffered from a significant detriment of performance (κw from 0.852 to 0.084) on the same test set. We showed that instances with unseen artifacts can be identified with OOD detection. UBIX can reduce their contribution to the bag-level predictions, improving reliability without retraining on new data. This potentially increases the applicability of artificial intelligence models to data from other scanners than the ones for which they were developed. The source code for UBIX, including trained model weights, is publicly available through https://github.com/qurAI-amsterdam/ubix-for-reliable-classification. Coen de Vente, Bram van Ginneken, Carel B. Hoyng, Caroline C. W. Klaver, Clara I. Sánchez |
Medical Image Anal. | 5 |
| 2024 | Nodule Detection and Generation on Chest X-Rays: NODE21 ChallengeabstractPulmonary nodules may be an early manifestation of lung cancer, the leading cause of cancer-related deaths among both men and women. Numerous studies have established that deep learning methods can yield high-performance levels in the detection of lung nodules in chest X-rays. However, the lack of gold-standard public datasets slows down the progression of the research and prevents benchmarking of methods for this task. To address this, we organized a public research challenge, NODE21, aimed at the detection and generation of lung nodules in chest X-rays. While the detection track assesses state-of-the-art nodule detection systems, the generation track determines the utility of nodule generation algorithms to augment training data and hence improve the performance of the detection systems. This paper summarizes the results of the NODE21 challenge and performs extensive additional experiments to examine the impact of the synthetically generated nodule training images on the detection algorithm performance. Ecem Sogancioglu, Bram van Ginneken, Finn Behrendt, Marcel Bengs, Alexander Schlaefer, Miron Radu, Di Xu 0003, Ke Sheng, Fabien Scalzo, Eric Marcus, Samuele Papa, Jonas Teuwen, Ernst Th. Scholten, Steven Schalekamp, Nils Hendrix, Colin Jacobs, Ward Hendrix, Clara I. Sánchez, Keelin Murphy |
IEEE Trans. Medical Imaging | 18 |
| 2024 | AIROGS: Artificial Intelligence for Robust Glaucoma Screening ChallengeabstractThe early detection of glaucoma is essential in preventing visual impairment. Artificial intelligence (AI) can be used to analyze color fundus photographs (CFPs) in a cost-effective manner, making glaucoma screening more accessible. While AI models for glaucoma screening from CFPs have shown promising results in laboratory settings, their performance decreases significantly in real-world scenarios due to the presence of out-of-distribution and low-quality images. To address this issue, we propose the Artificial Intelligence for Robust Glaucoma Screening (AIROGS) challenge. This challenge includes a large dataset of around 113,000 images from about 60,000 patients and 500 different screening centers, and encourages the development of algorithms that are robust to ungradable and unexpected input data. We evaluated solutions from 14 teams in this paper and found that the best teams performed similarly to a set of 20 expert ophthalmologists and optometrists. The highest-scoring team achieved an area under the receiver operating characteristic curve of 0.99 (95% CI: 0.98-0.99) for detecting ungradable images on-the-fly. Additionally, many of the algorithms showed robust performance when tested on three other publicly available datasets. These results demonstrate the feasibility of robust AI-enabled glaucoma screening. Coen de Vente, Koen A. Vermeer, Nicolas Jaccard, He Wang 0016, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro 0001, Devika R. G., Hrishikesh Panikkasseril Sethumadhavan, Densen Puthussery, Hong Liu 0007, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araujo, Guilherme Aresta, Hrvoje Bogunovic, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum 0002, Muhammad Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez |
IEEE Trans. Medical Imaging | 36 |
| 2023 | Automatic Segmentation of Retinal Layers in Multiple Neurodegenerative Disorder ScenariosabstractRetinal Optical Coherence Tomography (OCT) allows the non-invasive direct observation of the central nervous system, enabling the measurement and extraction of biomarkers from neural tissue that can be helpful in the assessment of ocular, systemic and Neurological Disorders (ND). Deep learning models can be trained to segment the retinal layers for biomarker extraction. However, the onset of ND can have an impact on the neural tissue, which can lead to the degraded performance of models not exposed to images displaying signs of disease during training. We present a fully automatic approach for the retinal layer segmentation in multiple neurodegenerative disorder scenarios, using an annotated dataset of patients of the most prevalent NDs: Alzheimer's disease, Parkinson's disease, multiple sclerosis and essential tremor, along with healthy control patients. Furthermore, we present a two-part, comprehensive study on the effects of ND on the performance of these models. The results show that images of healthy patients may not be sufficient for the robust training of automated segmentation models intended for the analysis of ND patients, and that using images representative of different NDs can increase the model performance. These results indicate that the presence or absence of patients of ND in datasets should be taken into account when training deep learning models for retinal layer segmentation, and that the proposed approach can provide a valuable tool for the robust and reliable diagnosis in multiple scenarios of ND. Mateo Gende, Víctor Mallen, Joaquim de Moura, Beatriz Cordón, Elena Garcia-Martin, Clara I. Sánchez, Jorge Novo, Marcos Ortega 0001 |
IEEE J. Biomed. Health Informatics | 6 |
| 2021 | Adversarial attack vulnerability of medical image analysis systems: Unexplored factorsabstractAdversarial attacks are considered a potentially serious security threat for machine learning systems. Medical image analysis (MedIA) systems have recently been argued to be vulnerable to adversarial attacks due to strong financial incentives and the associated technological infrastructure. In this paper, we study previously unexplored factors affecting adversarial attack vulnerability of deep learning MedIA systems in three medical domains: ophthalmology, radiology, and pathology. We focus on adversarial black-box settings, in which the attacker does not have full access to the target model and usually uses another model, commonly referred to as surrogate model, to craft adversarial examples that are then transferred to the target model. We consider this to be the most realistic scenario for MedIA systems. Firstly, we study the effect of weight initialization (pre-training on ImageNet or random initialization) on the transferability of adversarial attacks from the surrogate model to the target model, i.e., how effective attacks crafted using the surrogate model are on the target model. Secondly, we study the influence of differences in development (training and validation) data between target and surrogate models. We further study the interaction of weight initialization and data differences with differences in model architecture. All experiments were done with a perturbation degree tuned to ensure maximal transferability at minimal visual perceptibility of the attacks. Our experiments show that pre-training may dramatically increase the transferability of adversarial examples, even when the target and surrogate’s architectures are different: the larger the performance gain using pre-training, the larger the transferability. Differences in the development data between target and surrogate models considerably decrease the performance of the attack; this decrease is further amplified by difference in the model architecture. We believe these factors should be considered when developing security-critical MedIA systems planned to be deployed in clinical practice. We recommend avoiding using only standard components, such as pre-trained architectures and publicly available datasets, as well as disclosure of design specifications, in addition to using adversarial defense methods. When evaluating the vulnerability of MedIA systems to adversarial attacks, various attack scenarios and target-surrogate differences should be simulated to achieve realistic robustness estimates. The code and all trained models used in our experiments are publicly available.3 Gerda Bortsova, Cristina González-Gonzalo, Suzanne C. Wetstein, Florian Dubost, Ioannis Katramados, Laurens Hogeweg, Bart Liefers, Bram van Ginneken, Josien P. W. Pluim, Mitko Veta, Clara I. Sánchez, Marleen de Bruijne |
Medical Image Anal. | 11 |
| 2020 | Iterative Augmentation of Visual Evidence for Weakly-Supervised Lesion Localization in Deep Interpretability Frameworks: Application to Color Fundus ImagesabstractInterpretability of deep learning (DL) systems is gaining attention in medical imaging to increase experts' trust in the obtained predictions and facilitate their integration in clinical settings. We propose a deep visualization method to generate interpretability of DL classification tasks in medical imaging by means of visual evidence augmentation. The proposed method iteratively unveils abnormalities based on the prediction of a classifier trained only with image-level labels. For each image, initial visual evidence of the prediction is extracted with a given visual attribution technique. This provides localization of abnormalities that are then removed through selective inpainting. We iteratively apply this procedure until the system considers the image as normal. This yields augmented visual evidence, including less discriminative lesions which were not detected at first but should be considered for final diagnosis. We apply the method to grading of two retinal diseases in color fundus images: diabetic retinopathy (DR) and age-related macular degeneration (AMD). We evaluate the generated visual evidence and the performance of weakly-supervised localization of different types of DR and AMD abnormalities, both qualitatively and quantitatively. We show that the augmented visual evidence of the predictions highlights the biomarkers considered by experts for diagnosis and improves the final localization performance. It results in a relative increase of 11.2± 2.0% per image regarding sensitivity averaged at 10 false positives/image on average, when applied to different classification tasks, visual attribution techniques and network architectures. This makes the proposed method a useful tool for exhaustive visual support of DL classifiers in medical imaging. Cristina González-Gonzalo, Bart Liefers, Bram van Ginneken, Clara I. Sánchez |
IEEE Trans. Medical Imaging | 4 |
| 2019 | RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and ChallengeabstractRetinal swelling due to the accumulation of fluid is associated with the most vision-threatening retinal diseases. Optical coherence tomography (OCT) is the current standard of care in assessing the presence and quantity of retinal fluid and image-guided treatment management. Deep learning methods have made their impact across medical imaging, and many retinal OCT analysis methods have been proposed. However, it is currently not clear how successful they are in interpreting the retinal fluid on OCT, which is due to the lack of standardized benchmarks. To address this, we organized a challenge RETOUCH in conjunction with MICCAI 2017, with eight teams participating. The challenge consisted of two tasks: fluid detection and fluid segmentation. It featured for the first time: all three retinal fluid types, with annotated images provided by two clinical centers, which were acquired with the three most common OCT device vendors from patients with two different retinal diseases. The analysis revealed that in the detection task, the performance on the automated fluid detection was within the inter-grader variability. However, in the segmentation task, fusing the automated methods produced segmentations that were superior to all individual methods, indicating the need for further improvements in the segmentation performance. Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Riedl 0001, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen 0004, Carlos Ciller, Karthik Gopinath, Amirali Khodadadian Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline C. W. Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth |
IEEE Trans. Medical Imaging | 31 |
| 2017 | Large scale deep learning for computer aided detection of mammographic lesions
Thijs Kooi, Geert Litjens 0001, Bram van Ginneken, Albert Gubern-Mérida, Clara I. Sánchez, Ritse Mann, Gerard J. den Heeten, Nico Karssemeijer |
Medical Image Anal. | 5 |
| 2017 | A survey on deep learning in medical image analysis
Geert Litjens 0001, Thijs Kooi, Babak Ehteshami Bejnordi, Arnaud A. A. Setio, Francesco Ciompi, Mohsen Ghafoorian, Jeroen van der Laak, Bram van Ginneken, Clara I. Sánchez |
Medical Image Anal. | 9 |
| 2016 | Automatic detection of pleural effusion in chest radiographs
Pragnya Maduskar, Rick H. H. M. Philipsen, Jaime Melendez, Ernst Th. Scholten, Duncan Chanda, Helen Ayles, Clara I. Sánchez, Bram van Ginneken |
Medical Image Anal. | 7 |
| 2016 | Fast Convolutional Neural Network Training Using Selective Data Sampling: Application to Hemorrhage Detection in Color Fundus ImagesabstractConvolutional neural networks (CNNs) are deep learning network architectures that have pushed forward the state-of-the-art in a range of computer vision applications and are increasingly popular in medical image analysis. However, training of CNNs is time-consuming and challenging. In medical image analysis tasks, the majority of training examples are easy to classify and therefore contribute little to the CNN learning process. In this paper, we propose a method to improve and speed-up the CNN training for medical image analysis tasks by dynamically selecting misclassified negative samples during training. Training samples are heuristically sampled based on classification by the current status of the CNN. Weights are assigned to the training samples and informative samples are more likely to be included in the next CNN training iteration. We evaluated and compared our proposed method by training a CNN with (SeS) and without (NSeS) the selective sampling method. We focus on the detection of hemorrhages in color fundus images. A decreased training time from 170 epochs to 60 epochs with an increased performance-on par with two human experts-was achieved with areas under the receiver operating characteristics curve of 0.894 and 0.972 on two data sets. The SeS CNN statistically outperformed the NSeS CNN on an independent test set. Mark J. J. P. van Grinsven, Bram van Ginneken, Carel B. Hoyng, Thomas Theelen, Clara I. Sánchez |
IEEE Trans. Medical Imaging | 5 |
| 2016 | On Combining Multiple-Instance Learning and Active Learning for Computer-Aided Detection of TuberculosisabstractThe major advantage of multiple-instance learning (MIL) applied to a computer-aided detection (CAD) system is that it allows optimizing the latter with case-level labels instead of accurate lesion outlines as traditionally required for a supervised approach. As shown in previous work, a MIL-based CAD system can perform comparably to its supervised counterpart considering complex tasks such as chest radiograph scoring in tuberculosis (TB) detection. However, despite this remarkable achievement, the uncertainty inherent to MIL can lead to a less satisfactory outcome if analysis at lower levels (e.g., regions or pixels) is needed. This issue may seriously compromise the applicability of MIL to tasks related to quantification or grading, or detection of highly localized lesions. In this paper, we propose to reduce uncertainty by embedding a MIL classifier within an active learning (AL) framework. To minimize the labeling effort, we develop a novel instance selection mechanism that exploits the MIL problem definition through one-class classification. We adapt this mechanism to provide meaningful regions instead of individual instances for expert labeling, which is a more appropriate strategy given the application domain. In addition, and contrary to usual AL methods, a single iteration is performed. To show the effectiveness of our approach, we compare the output of a MIL-based CAD system trained with and without the proposed AL framework. The task is to detect textural abnormalities related to TB. Both quantitative and qualitative evaluations at the pixel level are carried out. Our method significantly improves the MIL-based classification. Jaime Melendez, Bram van Ginneken, Pragnya Maduskar, Rick H. H. M. Philipsen, Helen Ayles, Clara I. Sánchez |
IEEE Trans. Medical Imaging | 6 |
| 2016 | Pulmonary Nodule Detection in CT Images: False Positive Reduction Using Multi-View Convolutional NetworksabstractWe propose a novel Computer-Aided Detection (CAD) system for pulmonary nodules using multi-view convolutional networks (ConvNets), for which discriminative features are automatically learnt from the training data. The network is fed with nodule candidates obtained by combining three candidate detectors specifically designed for solid, subsolid, and large nodules. For each candidate, a set of 2-D patches from differently oriented planes is extracted. The proposed architecture comprises multiple streams of 2-D ConvNets, for which the outputs are combined using a dedicated fusion method to get the final classification. Data augmentation and dropout are applied to avoid overfitting. On 888 scans of the publicly available LIDC-IDRI dataset, our method reaches high detection sensitivities of 85.4% and 90.1% at 1 and 4 false positives per scan, respectively. An additional evaluation on independent datasets from the ANODE09 challenge and DLCST is performed. We showed that the proposed multi-view ConvNets is highly suited to be used for false positive reduction of a CAD system. Arnaud A. A. Setio, Francesco Ciompi, Geert Litjens 0001, Paul K. Gerke, Colin Jacobs, Sarah J. van Riel, Mathilde M. W. Wille, Matiullah Naqibullah, Clara I. Sánchez, Bram van Ginneken |
IEEE Trans. Medical Imaging | 9 |
| 2015 | Automatic Detection of Tuberculosis in Chest Radiographs Using a Combination of Textural, Focal, and Shape Abnormality AnalysisabstractTuberculosis (TB) is a common disease with high mortality and morbidity rates worldwide. Automatic systems to detect TB on chest radiographs (CXRs) can improve the efficiency of diagnostic algorithms for pulmonary TB. The diverse manifestation of TB on CXRs from different populations requires a system that can be adapted to deal with different types of abnormalities. A computer aided detection (CAD) system was developed which combines several subscores of supervised subsystems detecting textural, shape, and focal abnormalities into one TB score. A general framework was developed to combine an arbitrary number of subscores: subscores were normalized, collected in a feature vector and then combined using a supervised classifier into one combined score. The method was evaluated on two databases, both consisting of 200 digital CXRs, from: (A) Western high-risk group screening, (B) TB suspect screening in Africa. The subscores and combined score were compared to (1) an external, non-radiological, reference and (2) a radiological reference determined by a human expert. Performance was measured using Receiver Operator Characteristic (ROC) analysis. Different subscores performed best in the two databases. The combined TB score performed better than the individual subscores, except for the external reference in database B. The performances of the independent observer were slightly higher than the combined TB score. Compared to the external reference, differences in performance between the combined TB score and the independent observer were not significant in both databases. Supervised combination to compute an overall TB score allows for a necessary adaptation of the CAD system to different settings or different operational requirements. Laurens Hogeweg, Clara I. Sánchez, Pragnya Maduskar, Rick H. H. M. Philipsen, Alistair Story, Rodney Dawson, Grant Theron, Keertan Dheda, Liesbeth Peters-Bax, Bram van Ginneken |
IEEE Trans. Medical Imaging | 2 |
| 2015 | A Novel Multiple-Instance Learning-Based Approach to Computer-Aided Detection of Tuberculosis on Chest X-RaysabstractTo reach performance levels comparable to human experts, computer-aided detection (CAD) systems are typically optimized following a supervised learning approach that relies on large training databases comprising manually annotated lesions. However, manually outlining those lesions constitutes a difficult and time-consuming process that renders detailedly annotated data difficult to obtain. In this paper, we investigate an alternative approach, namely multiple-instance learning (MIL), that does not require detailed information for optimization. We have applied MIL to a CAD system for tuberculosis detection. Only the case condition (normal or abnormal) was required during training. Based upon the well-known miSVM technique, we propose an improved algorithm that overcomes miSVM's drawbacks related to positive instance underestimation and costly iteration. To show the advantages of our MIL-based approach as compared with a traditional supervised one, experiments with three X-ray databases were conducted. The area under the receiver operating characteristic curve was utilized as a performance measure. With the first database, for which training lesion annotations were available, our MIL-based method was comparable to the supervised system ( 0.86 versus 0.88 ). When evaluating the remaining databases, given their large difference with the previous image set, the most appealing strategy was to retrain the CAD systems. However, since only the case condition was available, only the MIL-based system could be retrained. This scenario, which is common in real-world applications, demonstrates the better adaptation capabilities of the proposed approach. After retraining, our MIL-based system significantly outperformed the supervised one ( 0.86 versus 0.79 and 0.91 versus 0.85 , and p=0.0002 , respectively). Jaime Melendez, Bram van Ginneken, Pragnya Maduskar, Rick H. H. M. Philipsen, Klaus Reither, Marianne Breuninger, Ifedayo M. O. Adetifa, Rahmatulai Maane, Helen Ayles, Clara I. Sánchez |
IEEE Trans. Medical Imaging | 10 |
| 2015 | Localized Energy-Based Normalization of Medical Images: Application to Chest RadiographyabstractAutomated quantitative analysis systems for medical images often lack the capability to successfully process images from multiple sources. Normalization of such images prior to further analysis is a possible solution to this limitation. This work presents a general method to normalize medical images and thoroughly investigates its effectiveness for chest radiography (CXR). The method starts with an energy decomposition of the image in different bands. Next, each band's localized energy is scaled to a reference value and the image is reconstructed. We investigate iterative and local application of this technique. The normalization is applied iteratively to the lung fields on six datasets from different sources, each comprising 50 normal CXRs and 50 abnormal CXRs. The method is evaluated in three supervised computer-aided detection tasks related to CXR analysis and compared to two reference normalization methods. In the first task, automatic lung segmentation, the average Jaccard overlap significantly increased from 0.72±0.30 and 0.87±0.11 for both reference methods to with normalization. The second experiment was aimed at segmentation of the clavicles. The reference methods had an average Jaccard index of 0.57±0.26 and 0.53±0.26; with normalization this significantly increased to . The third experiment was detection of tuberculosis related abnormalities in the lung fields. The average area under the Receiver Operating Curve increased significantly from 0.72±0.14 and 0.79±0.06 using the reference methods to with normalization. We conclude that the normalization can be successfully applied in chest radiography and makes supervised systems more generally applicable to data from different sources. Rick H. H. M. Philipsen, Pragnya Maduskar, Laurens Hogeweg, Jaime Melendez, Clara I. Sánchez, Bram van Ginneken |
IEEE Trans. Medical Imaging | 5 |
| 2013 | Perceptually adapted method for optic disc detection on retinal fundus imagesabstractThis paper presents a novel technique for the detection of the optic disc (OD) in retinal fundus images. The method exploits the color information of the image with a perception adapted approach. CIE L*a*b* color space along with CIE94 color distance are used to obtain 12 color derivatives for each pixel under study. Based on this information, a classifier assigns a probability value to each pixel in the image, meaning its suitability for being part of the OD border. Looking for the pixels with highest probability values, the method detects the basic points for the OD border that are subsequently connected with the livewire technique. The reliability of the tool has been tested with three different classifiers on 198 images from four public available databases obtaining an average success percentage of 85.48% and a mean distance to the closest point of 2 pixels. Irene Fondón, Mark J. J. P. van Grinsven, Clara I. Sánchez, Aurora Sáez |
CBMS | 3 |
| 2013 | Suppression of Translucent Elongated Structures: Applications in Chest RadiographyabstractProjection images, such as those routinely acquired in radiological practice, are difficult to analyze because multiple 3-D structures superimpose at a single point in the 2-D image. Removal of particular superimposed structures may improve interpretation of these images, both by humans and by computers. This work therefore presents a general method to isolate and suppress structures in 2-D projection images. The focus is on elongated structures, which allows an intensity model of a structure of interest to be extracted using local information only. The model is created from profiles sampled perpendicular to the structure. Profiles containing other structures are detected and removed to reduce the influence on the model. Subspace filtering, using blind source separation techniques, is applied to separate the structure to be suppressed from other structures. By subtracting the modeled structure from the original image a structure suppressed image is created. The method is evaluated in four experiments. In the first experiment ribs are suppressed in 20 artificial radiographs simulated from 3-D lung computed tomography (CT) images. The proposed method with blind source separation and outlier detection shows superior suppression of ribs in simulated radiographs, compared to a simplified approach without these techniques. Additionally, the ability of three observers to discriminate between patches containing ribs and containing no ribs, as measured by the area under the receiver operating characteristic curve (AUC), reduced from 0.99-1.00 on original images to 0.75-0.84 on suppressed images. In the second experiment clavicles are suppressed in 253 chest radiographs. The effect of suppression on clavicle visibility is evaluated using the clavicle contrast and border response, showing a reduction of 78% and 34%, respectively. In the third experiment nodules extracted from CT were simulated close to the clavicles in 100 chest radiographs. It was found that after suppression contrast of the nodules was higher than of the clavicles (1.35 and 0.55, respectively) than on original images (1.83 and 2.46, respectively). In the fourth experiment catheters were suppressed in chest radiographs. The ability of three observers to discriminate between patches originating from 36 images with and 21 images without catheters, as measured by the AUC, reduced from 0.98-0.99 on original images to 0.64-0.74 on suppressed images. We conclude that the presented method can markedly reduce the visibility of elongated structures in chest radiographs and shows potential to enhance diagnosis. Laurens Hogeweg, Clara I. Sánchez, Bram van Ginneken |
IEEE Trans. Medical Imaging | 2 |
| 2012 | Interactive classification of lung tissue in CT scans by combining prior and interactively obtained training data: A simulation study
Thessa T. J. P. Kockelkorn, Clara I. Sánchez, Jan C. Grutters, Rui Ramos, Pim A. de Jong, Max A. Viergever, José Ramos, Cornelia Schaefer-Prokop, Bram van Ginneken |
ICPR | 2 |
| 2012 | Clavicle segmentation in chest radiographs
Laurens Hogeweg, Clara I. Sánchez, Pim A. de Jong, Pragnya Maduskar, Bram van Ginneken |
Medical Image Anal. | 2 |
| 2012 | Contextual computer-aided detection: Improving bright lesion detection in retinal images and coronary calcification identification in CT scans
Clara I. Sánchez, Meindert Niemeijer, Ivana Isgum, Alina V. Dumitrescu, Maria S. A. Suttorp-Schulten, Michael D. Abràmoff, Bram van Ginneken |
Medical Image Anal. | 1 |
| 2012 | Computer-Aided Lesion Diagnosis in Automated 3-D Breast Ultrasound Using Coronal SpiculationabstractA computer-aided diagnosis (CAD) system for the classification of lesions as malignant or benign in automated 3-D breast ultrasound (ABUS) images, is presented. Lesions are automatically segmented when a seed point is provided, using dynamic programming in combination with a spiral scanning technique. A novel aspect of ABUS imaging is the presence of spiculation patterns in coronal planes perpendicular to the transducer. Spiculation patterns are characteristic for malignant lesions. Therefore, we compute spiculation features and combine them with features related to echotexture, echogenicity, shape, posterior acoustic behavior and margins. Classification experiments were performed using a support vector machine classifier and evaluation was done with leave-one-patient-out cross-validation. Receiver operator characteristic (ROC) analysis was used to determine performance of the system on a dataset of 201 lesions. We found that spiculation was among the most discriminative features. Using all features, the area under the ROC curve (A(z)) was 0.93, which was significantly higher than the performance without spiculation features (A(z)=0.90, p=0.02). On a subset of 88 cases, classification performance of CAD (A(z)=0.90) was comparable to the average performance of 10 readers (A(z)=0.87). Tao Tan 0002, Bram Platel, Henkjan J. Huisman, Clara I. Sánchez, Roel Mus, Nico Karssemeijer |
IEEE Trans. Medical Imaging | 4 |
| 2011 | Computer-Aided Detection of Ground Glass Nodules in Thoracic CT Images Using Shape, Intensity and Context Features
Colin Jacobs, Clara I. Sánchez, Stefan C. Saur, Thorsten Twellmann, Pim A. de Jong, Bram van Ginneken |
MICCAI (3) | 2 |
| 2010 | Active Learning for an Efficient Training Strategy of Computer-Aided Diagnosis Systems: Application to Diabetic Retinopathy Screening
Clara I. Sánchez, Meindert Niemeijer, Michael D. Abràmoff, Bram van Ginneken |
MICCAI (3) | 1 |
| 2010 | Retinopathy Online Challenge: Automatic Detection of Microaneurysms in Digital Color Fundus PhotographsabstractThe detection of microaneurysms in digital color fundus photographs is a critical first step in automated screening for diabetic retinopathy (DR), a common complication of diabetes. To accomplish this detection numerous methods have been published in the past but none of these was compared with each other on the same data. In this work we present the results of the first international microaneurysm detection competition, organized in the context of the Retinopathy Online Challenge (ROC), a multiyear online competition for various aspects of DR detection. For this competition, we compare the results of five different methods, produced by five different teams of researchers on the same set of data. The evaluation was performed in a uniform manner using an algorithm presented in this work. The set of data used for the competition consisted of 50 training images with available reference standard and 50 test images where the reference standard was withheld by the organizers (M. Niemeijer, B. van Ginneken, and M. D. Abràmoff). The results obtained on the test data was submitted through a website after which standardized evaluation software was used to determine the performance of each of the methods. A human expert detected microaneurysms in the test set to allow comparison with the performance of the automatic methods. The overall results show that microaneurysm detection is a challenging task for both the automatic methods as well as the human expert. There is room for improvement as the best performing system does not reach the performance of the human expert. The data associated with the ROC microaneurysm detection competition will remain publicly available and the website will continue accepting submissions. Meindert Niemeijer, Bram van Ginneken, Michael J. Cree, Atsushi Mizutani, Gwenolé Quellec, Clara I. Sánchez, Bob Zhang 0001, Roberto Hornero, Mathieu Lamard, Chisako Muramatsu, Xiangqian Wu 0002, Guy Cazuguel, Jane You, Agustín Mayo, Qin Li 0001, Yuji Hatanaka, Béatrice Cochener, Christian Roux, Fakhri Karray, María García, Hiroshi Fujita 0001, Michael D. Abràmoff |
IEEE Trans. Medical Imaging | 6 |
| 2009 | Retinal image analysis based on mixture models to detect hard exudates
Clara I. Sánchez, María García, Agustín Mayo, María Isabel López, Roberto Hornero |
Medical Image Anal. | 1 |