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Gregg T. Beckham

dblp:281/9136 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2025
0000-0002-3480-212XORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 1 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › molecular property prediction
protein property prediction
0.912025
Accessible, uniform protein property prediction with a scikit-learn based toolset AIDE · Bioinform. 2025

Methods — techniques the papers use, named apart from their topics

zero-shot prediction · 0.9supervised learning · 0.9scikit-learn · 0.9
YearPublicationVenuePosition
2025 Accessible, uniform protein property prediction with a scikit-learn based toolset AIDE
abstract
SUMMARY: Protein property prediction via machine learning with and without labeled data is becoming increasingly powerful, yet methods are disparate and capabilities vary widely over applications. The software presented here, "Artificial Intelligence Driven protein Estimation (AIDE)", enables instantiating, optimizing, and testing many zero-shot and supervised property prediction methods for variants and variable length homologs in a single, reproducible notebook or script by defining a modular, standardized application programming interface (API), i.e. drop-in compatible with scikit-learn transformers and pipelines. AVAILABILITY AND IMPLEMENTATION: AIDE is an installable, importable python package inheriting from scikit-learn classes and API and is installable on Windows, Mac, and Linux. Many of the wrapped models internal to AIDE will be effectively inaccessible without a GPU, and some assume CUDA. The newest stable, tested version can be found at https://github.com/beckham-lab/aide_predict and a full user guide and API reference can be found at https://beckham-lab.github.io/aide_predict/. Static versions of both at the time of writing can be found on Zenodo.
Evan Komp, Kristoffer E. Johansson, Nicholas Paul Gauthier, Japheth E. Gado, Kresten Lindorff-Larsen, Gregg T. Beckham
Bioinform.6