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Naichen Shi

dblp:285/5214 · DBLP profile ↗
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8ranked-venue papers
5as first author
8since 2021 · last 2025
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 6 · 3 first-author · 6 since 2021Applied, interdisciplinary, general and emerging computing · 2 · 2 first-author · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
6 papers
Representation and self-supervised learning · 39% Optimization for machine learning · 26% Trustworthy machine learning · 17%
Theoretical computer science
1 paper
Mathematical optimization · 100%

Topics — the 17 heaviest of 19, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Optimization for machine learning › stochastic optimization
adaptive gradient methods
1.122022
Adam Can Converge Without Any Modification On Update Rules · NeurIPS 2022
RMSprop converges with proper hyper-parameter · ICLR 2021
Machine learning › Representation and self-supervised learning › representation learning
feature extraction
1.022024
Triple Component Matrix Factorization: Untangling Global, Local, and Noisy Components · J. Mach. Learn. Res. 2024
Personalized PCA: Decoupling Shared and Unique Features · J. Mach. Learn. Res. 2024
Machine learning › Trustworthy machine learning › uncertainty estimation › predictive uncertainty
semantic uncertainty
0.912025
Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models · NeurIPS 2025
Machine learning › Trustworthy machine learning
uncertainty estimation
0.912025
Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models · NeurIPS 2025
Machine learning › Representation and self-supervised learning › representation learning
dimensionality reduction
0.812024
Personalized PCA: Decoupling Shared and Unique Features · J. Mach. Learn. Res. 2024
Machine learning › Efficient and distributed learning
federated learning
0.812024
Personalized PCA: Decoupling Shared and Unique Features · J. Mach. Learn. Res. 2024
Machine learning › Representation and self-supervised learning
matrix factorization
0.812024
Triple Component Matrix Factorization: Untangling Global, Local, and Noisy Components · J. Mach. Learn. Res. 2024
Machine learning › Representation and self-supervised learning › representation learning › dimensionality reduction
principal component analysis
0.812024
Personalized PCA: Decoupling Shared and Unique Features · J. Mach. Learn. Res. 2024
Machine learning › Representation and self-supervised learning › representation learning › unsupervised representation learning › sparse coding
dictionary learning
0.712023
Personalized Dictionary Learning for Heterogeneous Datasets · NeurIPS 2023
Machine learning › Optimization for machine learning › stochastic optimization › adaptive gradient methods
adam convergence
0.612022
Adam Can Converge Without Any Modification On Update Rules · NeurIPS 2022
Mathematical optimization
convergence analysis
0.612022
Adam Can Converge Without Any Modification On Update Rules · NeurIPS 2022
Mathematical optimization
stochastic optimization
0.612022
Adam Can Converge Without Any Modification On Update Rules · NeurIPS 2022
Machine learning › Optimization for machine learning
convergence analysis
0.512021
RMSprop converges with proper hyper-parameter · ICLR 2021
Machine learning › Optimization for machine learning
stochastic optimization
0.512021
RMSprop converges with proper hyper-parameter · ICLR 2021
Machine learning › Probabilistic and Bayesian machine learning › stochastic processes
markov chain
0.312025
Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models · NeurIPS 2025
Data mining
anomaly detection
0.212024
Triple Component Matrix Factorization: Untangling Global, Local, and Noisy Components · J. Mach. Learn. Res. 2024
Image and video processing
video segmentation
0.212024
Triple Component Matrix Factorization: Untangling Global, Local, and Noisy Components · J. Mach. Learn. Res. 2024

Methods — techniques the papers use, named apart from their topics

alternating minimization · 2.3KKT conditions · 2.3non-convex optimization · 1.5semantic similarity · 0.9perturbation · 0.9genetic algorithm · 0.9nonconvex optimization · 0.8generalized retractions · 0.8constrained optimization · 0.8personalized matching and averaging · 0.7linear convergence analysis · 0.7strong growth condition · 0.6momentum parameters · 0.6
YearPublicationVenuePosition
2025 Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models
abstract
Large language models (LLMs) have transformed natural language processing, but their reliable deployment requires effective uncertainty quantification (UQ). Existing UQ methods are often heuristic and lack a fully probabilistic foundation. This paper begins by providing a theoretical justification for the role of perturbations in UQ for LLMs. We then introduce a dual random walk perspective, modeling input–output pairs as two Markov chains with transition probabilities defined by semantic similarity. Building on this, we propose a fully probabilistic framework based on an inverse model, which quantifies uncertainty by evaluating the diversity of the input space conditioned on a given output through systematic perturbations. Within this framework, we define a new uncertainty measure, Inv-Entropy. A key strength of our framework is its flexibility: it supports various definitions of uncertainty measures, embeddings, perturbation strategies, and similarity metrics. We also propose GAAP, a perturbation algorithm based on genetic algorithms, which enhances the diversity of sampled inputs. In addition, we introduce a new evaluation metric, Temperature Sensitivity of Uncertainty (TSU), which directly assesses uncertainty without relying on correctness as a proxy. Extensive experiments demonstrate that Inv-Entropy outperforms existing semantic UQ methods.
Haoyi Song, Ruihan Ji, Naichen Shi, Fan Lai 0001, Raed Kontar
NeurIPS3
2025 Diffusion-Based Surrogate Modeling and Multi-Fidelity Calibration
abstract
Physics simulations have become fundamental tools to study myriad engineering systems. As physics simulations often involve simplifications, their outputs should be calibrated using real-world data. In this paper, we present a diffusion-based surrogate (DBS) that calibrates multi-fidelity physics simulations with diffusion generative processes. DBS categorizes multi-fidelity physics simulations into inexpensive and expensive simulations, depending on the computational costs. The inexpensive simulations, which can be obtained with low latency, directly inject contextual information into diffusion models. Furthermore, when results from expensive simulations are available, DBS refines the quality of generated samples via a guided diffusion process. This design circumvents the need for large amounts of expensive physics simulations to train denoising diffusion models, thus lending flexibility to practitioners. DBS builds on Bayesian probabilistic models and is equipped with a theoretical guarantee that provides upper bounds on the Wasserstein distance between the sample and underlying true distribution. The probabilistic nature of DBS also provides a convenient approach for uncertainty quantification in prediction. Our models excel in cases where physics simulations are imperfect and sometimes inaccessible. We use a numerical simulation in fluid dynamics and a case study in laser-based metal powder deposition additive manufacturing to demonstrate how DBS calibrates multi-fidelity physics simulations with observations to obtain surrogates with superior predictive performance.
Naichen Shi, Shenghan Guo, Raed Kontar
IEEE Trans Autom. Sci. Eng.1
2024 Triple Component Matrix Factorization: Untangling Global, Local, and Noisy Components
abstract
In this work, we study the problem of common and unique feature extraction from noisy data. When we have $N$ observation matrices from $N$ different and associated sources corrupted by sparse and potentially gross noise, can we recover the common and unique components from these noisy observations? This is a challenging task as the number of parameters to estimate is approximately thrice the number of observations. Despite the difficulty, we propose an intuitive alternating minimization algorithm called triple component matrix factorization (TCMF) to recover the three components exactly. TCMF is distinguished from existing works in literature thanks to two salient features. First, TCMF is a principled method to separate the three components given noisy observations provably. Second, the bulk of the computation in TCMF can be distributed. On the technical side, we formulate the problem as a constrained nonconvex nonsmooth optimization problem. Despite the intricate nature of the problem, we provide a Taylor series characterization of its solution by solving the corresponding Karush–Kuhn–Tucker conditions. Using this characterization, we can show that the alternating minimization algorithm makes significant progress at each iteration and converges into the ground truth at a linear rate. Numerical experiments in video segmentation and anomaly detection highlight the superior feature extraction abilities of TCMF.
Naichen Shi, Salar Fattahi, Raed Kontar
J. Mach. Learn. Res.1
2024 Personalized PCA: Decoupling Shared and Unique Features
abstract
In this paper, we tackle a significant challenge in PCA: heterogeneity. When data are collected from different sources with heterogeneous trends while still sharing some congruency, it is critical to extract shared knowledge while retaining the unique features of each source. To this end, we propose personalized PCA (PerPCA), which uses mutually orthogonal global and local principal components to encode both unique and shared features. We show that, under mild conditions, both unique and shared features can be identified and recovered by a constrained optimization problem, even if the covariance matrices are immensely different. Also, we design a fully federated algorithm inspired by distributed Stiefel gradient descent to solve the problem. The algorithm introduces a new group of operations called generalized retractions to handle orthogonality constraints, and only requires global PCs to be shared across sources. We prove the linear convergence of the algorithm under suitable assumptions. Comprehensive numerical experiments highlight PerPCA's superior performance in feature extraction and prediction from heterogeneous datasets. As a systematic approach to decouple shared and unique features from heterogeneous datasets, PerPCA finds applications in several tasks, including video segmentation, topic extraction, and feature clustering.
Naichen Shi, Raed Kontar
J. Mach. Learn. Res.1
2024 Fed-ensemble: Ensemble Models in Federated Learning for Improved Generalization and Uncertainty Quantification
abstract
The increase in the computational power of edge devices has opened up the possibility of processing some of the data at the edge and distributing model learning. This paradigm is often called federated learning (FL), where edge devices exploit their local computational resources to train models collaboratively. Though FL has seen recent success, it is unclear how to characterize uncertainties in FL predictions. In this paper, we proposeFed-ensemble: a simple approach that brings model ensembling to FL. Instead of aggregating local models to update a single global model,Fed-ensembleuses random permutations to update a group of$K$models and then obtains predictions through model averaging.Fed-ensemblecan be readily utilized within established FL methods and does not impose a computational overhead compared with single-model methods. Empirical results show that our model has superior performance over several FL algorithms on a wide range of data sets and excels in heterogeneous settings often encountered in FL applications. Also, by carefully choosing client-dependent weights in the inference stage,Fed-ensemblebecomes personalized and yields even better performance. Theoretically, we show that predictions on new data from all$K$models belong to the same predictive posterior distribution under a neural tangent kernel regime. This result, in turn, sheds light on the generalization advantages of model averaging and justifies the uncertainty quantification capability. We also illustrate thatFed-ensemblehas an elegant Bayesian interpretation.Note to Practitioners—provides an algorithm that extracts a set of$K$solutions without imposing any additional communication overhead in FL. Given multiple solutions,Fed-ensemblecan be exploited to personalize inference as well as quantify uncertainty. Such capabilities may be beneficial within multiple practical systems that require uncertainty-aware decision-making. Further,Fed-ensemblemay be useful for model validation and hypothesis testing.
Naichen Shi, Fan Lai 0001, Raed Kontar, Mosharaf Chowdhury
IEEE Trans Autom. Sci. Eng.1
2023 Personalized Dictionary Learning for Heterogeneous Datasets
abstract
We introduce a relevant yet challenging problem named Personalized Dictionary Learning (PerDL), where the goal is to learn sparse linear representations from heterogeneous datasets that share some commonality. In PerDL, we model each dataset's shared and unique features as global and local dictionaries. Challenges for PerDL not only are inherited from classical dictionary learning(DL), but also arise due to the unknown nature of the shared and unique features. In this paper, we rigorously formulate this problem and provide conditions under which the global and local dictionaries can be provably disentangled. Under these conditions, we provide a meta-algorithm called Personalized Matching and Averaging (PerMA) that can recover both global and local dictionaries from heterogeneous datasets. PerMA is highly efficient; it converges to the ground truth at a linear rate under suitable conditions. Moreover, it automatically borrows strength from strong learners to improve the prediction of weak learners. As a general framework for extracting global and local dictionaries, we show the application of PerDL in different learning tasks, such as training with imbalanced datasets and video surveillance.
Geyu Liang, Naichen Shi, Raed Kontar, Salar Fattahi
NeurIPS2
2022 Adam Can Converge Without Any Modification On Update Rules
abstract
Ever since \citet{reddi2019convergence} pointed out the divergence issue of Adam, many new variants have been designed to obtain convergence. However, vanilla Adam remains exceptionally popular and it works well in practice. Why is there a gap between theory and practice? We point out there is a mismatch between the settings of theory and practice: \citet{reddi2019convergence} pick the problem after picking the hyperparameters of Adam, i.e., $(\beta_1,\beta_2)$; while practical applications often fix the problem first and then tune $(\beta_1,\beta_2)$. Due to this observation, we conjecture that the empirical convergence can be theoretically justified, only if we change the order of picking the problem and hyperparameter. In this work, we confirm this conjecture. We prove that, when the 2nd-order momentum parameter $\beta_2$ is large and 1st-order momentum parameter $\beta_1 < \sqrt{\beta_2}<1$, Adam converges to the neighborhood of critical points. The size of the neighborhood is propositional to the variance of stochastic gradients. Under an extra condition (strong growth condition), Adam converges to critical points. It is worth mentioning that our results cover a wide range of hyperparameters: as $\beta_2$ increases, our convergence result can cover any $\beta_1 \in [0,1)$ including $\beta_1=0.9$, which is the default setting in deep learning libraries. To our knowledge, this is the first result showing that Adam can converge {\it without any modification} on its update rules. Further, our analysis does not require assumptions of bounded gradients or bounded 2nd-order momentum. When $\beta_2$ is small, we further point out a large region of $(\beta_1,\beta_2)$ combinations where Adam can diverge to infinity. Our divergence result considers the same setting (fixing the optimization problem ahead) as our convergence result, indicating that there is a phase transition from divergence to convergence when increasing $\beta_2$. These positive and negative results provide suggestions on how to tune Adam hyperparameters: for instance, when Adam does not work well, we suggest tuning up $\beta_2$ and trying $\beta_1< \sqrt{\beta_2}$.
Yushun Zhang, Congliang Chen, Naichen Shi, Ruoyu Sun 0001, Zhi-Quan Luo
NeurIPS3
2021 RMSprop converges with proper hyper-parameter
Naichen Shi, Dawei Li 0010, Mingyi Hong 0001, Ruoyu Sun 0001
ICLR1