EDBT 2026 Demo / reviewers in the wild / expert
Karen Marder
dblp:289/4211
· DBLP profile ↗
8ranked-venue papers
0as first author
7since 2021 · last 2025
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 8 · 7 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | Mini-mental status examination phenotyping for Alzheimer's disease patients using both structured and narrative electronic health record featuresabstractOBJECTIVE: This study aims to automate the prediction of Mini-Mental State Examination (MMSE) scores, a widely adopted standard for cognitive assessment in patients with Alzheimer's disease, using natural language processing (NLP) and machine learning (ML) on structured and unstructured EHR data. MATERIALS AND METHODS: We extracted demographic data, diagnoses, medications, and unstructured clinical visit notes from the EHRs. We used Latent Dirichlet Allocation (LDA) for topic modeling and Term-Frequency Inverse Document Frequency (TF-IDF) for n-grams. In addition, we extracted meta-features such as age, ethnicity, and race. Model training and evaluation employed eXtreme Gradient Boosting (XGBoost), Stochastic Gradient Descent Regressor (SGDRegressor), and Multi-Layer Perceptron (MLP). RESULTS: We analyzed 1654 clinical visit notes collected between September 2019 and June 2023 for 1000 Alzheimer's disease patients. The average MMSE score was 20, with patients averaging 76.4 years old, 54.7% female, and 54.7% identifying as White. The best-performing model (ie, lowest root mean squared error (RMSE)) is MLP, which achieved an RMSE of 5.53 on the validation set using n-grams, indicating superior prediction performance over other models and feature sets. The RMSE on the test set was 5.85. DISCUSSION: This study developed a ML method to predict MMSE scores from unstructured clinical notes, demonstrating the feasibility of utilizing NLP to support cognitive assessment. Future work should focus on refining the model and evaluating its clinical relevance across diverse settings. CONCLUSION: We contributed a model for automating MMSE estimation using EHR features, potentially transforming cognitive assessment for Alzheimer's patients and paving the way for more informed clinical decisions and cohort identification. Betina Ross S. Idnay, Fangyi Chen, Casey N. Ta, Matthew W. Schelke, Karen Marder, Chunhua Weng |
J. Am. Medical Informatics Assoc. | 6 |
| 2024 | Sociotechnical feasibility of natural language processing-driven tools in clinical trial eligibility prescreening for Alzheimer's disease and related dementiasabstractBACKGROUND: Alzheimer's disease and related dementias (ADRD) affect over 55 million globally. Current clinical trials suffer from low recruitment rates, a challenge potentially addressable via natural language processing (NLP) technologies for researchers to effectively identify eligible clinical trial participants. OBJECTIVE: This study investigates the sociotechnical feasibility of NLP-driven tools for ADRD research prescreening and analyzes the tools' cognitive complexity's effect on usability to identify cognitive support strategies. METHODS: A randomized experiment was conducted with 60 clinical research staff using three prescreening tools (Criteria2Query, Informatics for Integrating Biology and the Bedside [i2b2], and Leaf). Cognitive task analysis was employed to analyze the usability of each tool using the Health Information Technology Usability Evaluation Scale. Data analysis involved calculating descriptive statistics, interrater agreement via intraclass correlation coefficient, cognitive complexity, and Generalized Estimating Equations models. RESULTS: Leaf scored highest for usability followed by Criteria2Query and i2b2. Cognitive complexity was found to be affected by age, computer literacy, and number of criteria, but was not significantly associated with usability. DISCUSSION: Adopting NLP for ADRD prescreening demands careful task delegation, comprehensive training, precise translation of eligibility criteria, and increased research accessibility. The study highlights the relevance of these factors in enhancing NLP-driven tools' usability and efficacy in clinical research prescreening. CONCLUSION: User-modifiable NLP-driven prescreening tools were favorably received, with system type, evaluation sequence, and user's computer literacy influencing usability more than cognitive complexity. The study emphasizes NLP's potential in improving recruitment for clinical trials, endorsing a mixed-methods approach for future system evaluation and enhancements. Betina Ross S. Idnay, Jianfang Liu, Yilu Fang, Alex Hernandez, Shivani Kaw, Alicia Etwaru, Janeth Juarez Padilla, Sergio Ozoria Ramirez, Karen Marder, Chunhua Weng, Rebecca Schnall |
J. Am. Medical Informatics Assoc. | 9 |
| 2024 | Promoting equity in clinical research: The role of social determinants of health
Betina Ross S. Idnay, Yilu Fang, Edward Stanley, Brenda Ruotolo, Wendy K. Chung, Karen Marder, Chunhua Weng |
J. Biomed. Informatics | 6 |
| 2023 | A data-driven approach to optimizing clinical study eligibility criteria
Yilu Fang, Hao Liu 0054, Betina Ross S. Idnay, Casey N. Ta, Karen Marder, Chunhua Weng |
J. Biomed. Informatics | 5 |
| 2022 | Optimizing Clinical Research Eligibility Prescreening: An Iterative Usability Evaluation of an NLP-driven Cohort Identification Tool
Betina Ross S. Idnay, Yilu Fang, Caitlin N. Dreisbach, Karen Marder, Chunhua Weng, Rebecca Schnall |
AMIA | 4 |
| 2022 | Combining human and machine intelligence for clinical trial eligibility queryingabstractOBJECTIVE: To combine machine efficiency and human intelligence for converting complex clinical trial eligibility criteria text into cohort queries. MATERIALS AND METHODS: Criteria2Query (C2Q) 2.0 was developed to enable real-time user intervention for criteria selection and simplification, parsing error correction, and concept mapping. The accuracy, precision, recall, and F1 score of enhanced modules for negation scope detection, temporal and value normalization were evaluated using a previously curated gold standard, the annotated eligibility criteria of 1010 COVID-19 clinical trials. The usability and usefulness were evaluated by 10 research coordinators in a task-oriented usability evaluation using 5 Alzheimer's disease trials. Data were collected by user interaction logging, a demographic questionnaire, the Health Information Technology Usability Evaluation Scale (Health-ITUES), and a feature-specific questionnaire. RESULTS: The accuracies of negation scope detection, temporal and value normalization were 0.924, 0.916, and 0.966, respectively. C2Q 2.0 achieved a moderate usability score (3.84 out of 5) and a high learnability score (4.54 out of 5). On average, 9.9 modifications were made for a clinical study. Experienced researchers made more modifications than novice researchers. The most frequent modification was deletion (5.35 per study). Furthermore, the evaluators favored cohort queries resulting from modifications (score 4.1 out of 5) and the user engagement features (score 4.3 out of 5). DISCUSSION AND CONCLUSION: Features to engage domain experts and to overcome the limitations in automated machine output are shown to be useful and user-friendly. We concluded that human-computer collaboration is key to improving the adoption and user-friendliness of natural language processing. Yilu Fang, Betina Ross S. Idnay, Yingcheng Sun, Hao Liu 0054, Zhehuan Chen, Karen Marder, Hua Xu 0001, Rebecca Schnall, Chunhua Weng |
J. Am. Medical Informatics Assoc. | 6 |
| 2021 | Cognitive Function Characterization Using Electronic Health Records Notes
Adrienne Pichon, Betina Ross S. Idnay, Rebecca Schnall, Karen Marder, Chunhua Weng |
AMIA | 4 |
| 2020 | Impact of IMPACT: Longitudinal Analysis of an Integrated Participant Scheduling System in a Clinical Research Setting
Alex M. Butler, Yat S. So, Linda Busacca, Karen Marder, Henry N. Ginsberg, Dianne Frederick, Ismael Castaneda, Elizabeth Guerrido, Chunhua Weng |
AMIA | 5 |