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Matt Lyon

dblp:291/0014 · DBLP profile ↗
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2ranked-venue papers
0as first author
2since 2021 · last 2021
0000-0002-2500-1013ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 54% Medical and health informatics · 23% Computational social science and digital humanities · 23%

Topics — the 5 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › knowledge representation in biology
biomedical knowledge graph
0.512021
EpiGraphDB: a database and data mining platform for health data science · Bioinform. 2021
Computational social science and digital humanities
causal inference
0.512021
EpiGraphDB: a database and data mining platform for health data science · Bioinform. 2021
Medical and health informatics
epidemiology
0.512021
EpiGraphDB: a database and data mining platform for health data science · Bioinform. 2021
Bioinformatics and computational biology › statistical genetics › genetic study design
mendelian randomization
0.512021
EpiGraphDB: a database and data mining platform for health data science · Bioinform. 2021
Bioinformatics and computational biology › drug discovery › target identification
drug target identification
0.112021
EpiGraphDB: a database and data mining platform for health data science · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

graph database · 0.5data mining · 0.5data integration · 0.5
YearPublicationVenuePosition
2021 Erratum to: EpiGraphDB: a database and data mining platform for health data science
abstract
Bioinformatics (2020) doi: 10.1093/bioinformatics/btaa961 Upon the original publication of this article, there was an error in the source code syntax under sub-section “2.2 Integration of epidemiological evidence” in the “Materials and methods” section. The source code syntax should read: “(e.g. (Gwas {trait: ‘Body mass index’})-[MR {beta, se, pval}]->(Gwas {trait: ‘Coronary heart disease’}))” instead of “ (e.g. [Gwas (trait: ‘Body mass index’)]-[MR {beta, se, pval}]->(Gwas {trait: ‘Coronary heart disease’})))”. This error has now been corrected. The Publisher apologizes for the error.
Yi Liu 0058, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng 0006, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt
Bioinform.6
2021 EpiGraphDB: a database and data mining platform for health data science
abstract
MOTIVATION: The wealth of data resources on human phenotypes, risk factors, molecular traits and therapeutic interventions presents new opportunities for population health sciences. These opportunities are paralleled by a growing need for data integration, curation and mining to increase research efficiency, reduce mis-inference and ensure reproducible research. RESULTS: We developed EpiGraphDB (https://epigraphdb.org/), a graph database containing an array of different biomedical and epidemiological relationships and an analytical platform to support their use in human population health data science. In addition, we present three case studies that illustrate the value of this platform. The first uses EpiGraphDB to evaluate potential pleiotropic relationships, addressing mis-inference in systematic causal analysis. In the second case study, we illustrate how protein-protein interaction data offer opportunities to identify new drug targets. The final case study integrates causal inference using Mendelian randomization with relationships mined from the biomedical literature to 'triangulate' evidence from different sources. AVAILABILITY AND IMPLEMENTATION: The EpiGraphDB platform is openly available at https://epigraphdb.org. Code for replicating case study results is available at https://github.com/MRCIEU/epigraphdb as Jupyter notebooks using the API, and https://mrcieu.github.io/epigraphdb-r using the R package. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Yi Liu 0058, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng 0006, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt
Bioinform.6