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Yanyi Song

dblp:291/6725 · DBLP profile ↗
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2ranked-venue papers
1as first author
2since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Computer networks · 1 · 1 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
confounder adjustment
0.512021
Efficient and effective control of confounding in eQTL mapping studies through joint differential expression and Mendelian randomization analyses · Bioinform. 2021
Bioinformatics and computational biology › functional genomics
eQTL mapping
0.512021
Efficient and effective control of confounding in eQTL mapping studies through joint differential expression and Mendelian randomization analyses · Bioinform. 2021
Bioinformatics and computational biology › statistical genetics › genetic study design
mendelian randomization
0.112021
Efficient and effective control of confounding in eQTL mapping studies through joint differential expression and Mendelian randomization analyses · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

mendelian randomization · 0.5differential expression analysis · 0.5PEER factor estimation · 0.5
YearPublicationVenuePosition
2024 Design of A Novel NTN PRACH Format Combining Zadoff-Chu and Golden Sequences
abstract
Non-terrestrial network (NTN) is the next generation access technology between terminals and satellites, based on new air interface technology developed by the 3rd Generation Partnership Project(3GPP) in the Release 17. While 3GPP integrates 5G NR's Physical Random Access Channel (PRACH) into NTN scenarios, it faces an issue of insufficient preambles. Currently, numerous studies have combined M sequences or Golden sequences with Zadoff-Chu (ZC) sequences to design PRACH formats to address this challenge. This paper introduces a novel PRACH format based on Golden sequences and ZC sequences. Golden sequences and ZC sequences are individually detected, resulting in the introduction of two detection methods: the Golden priority detection algorithm and the ZC priority detection algorithm. This innovative design resolves the problem of massive detection calculations found in current common detection algorithms and also increases the quantity of preambles. Finally, the simulation results show that the new scheme can obtain the accurate results with less calculation.
Yanyi Song, Hongwen Yang
WCNC1
2021 Efficient and effective control of confounding in eQTL mapping studies through joint differential expression and Mendelian randomization analyses
abstract
MOTIVATION: Identifying cis-acting genetic variants associated with gene expression levels-an analysis commonly referred to as expression quantitative trait loci (eQTLs) mapping-is an important first step toward understanding the genetic determinant of gene expression variation. Successful eQTL mapping requires effective control of confounding factors. A common method for confounding effects control in eQTL mapping studies is the probabilistic estimation of expression residual (PEER) analysis. PEER analysis extracts PEER factors to serve as surrogates for confounding factors, which is further included in the subsequent eQTL mapping analysis. However, it is computationally challenging to determine the optimal number of PEER factors used for eQTL mapping. In particular, the standard approach to determine the optimal number of PEER factors examines one number at a time and chooses a number that optimizes eQTLs discovery. Unfortunately, this standard approach involves multiple repetitive eQTL mapping procedures that are computationally expensive, restricting its use in large-scale eQTL mapping studies that being collected today. RESULTS: Here, we present a simple and computationally scalable alternative, Effect size Correlation for COnfounding determination (ECCO), to determine the optimal number of PEER factors used for eQTL mapping studies. Instead of performing repetitive eQTL mapping, ECCO jointly applies differential expression analysis and Mendelian randomization analysis, leading to substantial computational savings. In simulations and real data applications, we show that ECCO identifies a similar number of PEER factors required for eQTL mapping analysis as the standard approach but is two orders of magnitude faster. The computational scalability of ECCO allows for optimized eQTL discovery across 48 GTEx tissues for the first time, yielding an overall 5.89% power gain on the number of eQTL harboring genes (eGenes) discovered as compared to the previous GTEx recommendation that does not attempt to determine tissue-specific optimal number of PEER factors. AVAILABILITYAND IMPLEMENTATION: Our method is implemented in the ECCO software, which, along with its GTEx mapping results, is freely available at www.xzlab.org/software.html. All R scripts used in this study are also available at this site. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Huanhuan Zhu, Yanyi Song, Qinke Peng
Bioinform.3