This paper introduces Flamingo, a system for secure aggregation of data across a large set of clients. In secure aggregation, a server sums up the private inputs of clients and obtains the result without learning anything about the individual inputs beyond what is implied by the final sum. Flamingo focuses on the multi-round setting found in federated learning in which many consecutive summations (averages) of model weights are performed to derive a good model. Previous protocols, such as Bell et al. (CCS ’20), have been designed for a single round and are adapted to the federated learning setting by repeating the protocol multiple times. Flamingo eliminates the need for the per-round setup of previous protocols, and has a new lightweight dropout resilience protocol to ensure that if clients leave in the middle of a sum the server can still obtain a meaningful result. Furthermore, Flamingo introduces a new way to locally choose the so-called client neighborhood introduced by Bell et al. These techniques help Flamingo reduce the number of interactions between clients and the server, resulting in a significant reduction in the end-to-end runtime for a full training session over prior work.We implement and evaluate Flamingo and show that it can securely train a neural network on the (Extended) MNIST and CIFAR-100 datasets, and the model converges without a loss in accuracy, compared to a non-private federated learning system.

SUMMARY: Easy-to-use, open-source, general-purpose programs for modeling a protein structure from inter-atomic distances are needed for modeling from experimental data and refinement of predicted protein structures. OpenMDlr is an open-source Python package for modeling protein structures from pairwise distances between any atoms, and optionally, dihedral angles. We provide a user-friendly input format for harnessing modern biomolecular force fields in an easy-to-install package that can efficiently make use of multiple compute cores. AVAILABILITY AND IMPLEMENTATION: OpenMDlr is available at https://github.com/BSDExabio/OpenMDlr-amber. The package is written in Python (versions 3.x). All dependencies are open-source and can be installed with the Conda package management system. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.