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Benjamin Bockstege

dblp:30/11133 · DBLP profile ↗
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2ranked-venue papers
1as first author
0since 2021 · last 2014
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › systems biology
flux variability analysis
0.012012
CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED · Bioinform. 2012
Bioinformatics and computational biology › systems biology
metabolic modeling
0.012012
CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED · Bioinform. 2012

Methods — techniques the papers use, named apart from their topics

cytoscape plugin · 0.1
YearPublicationVenuePosition
2014 A management system for motion-based gaming peripherals for physical therapy instrumentation
abstract
The rise in motion-based gaming peripherals has afforded intriguing opportunities for low-cost instrumentation of health-oriented activities. One particular activity, that of physical therapy, is of considerable interest as traditional systems in the area cost on the order of tens of thousands of dollars. However, while recent research has shown that gaming peripherals can deliver high quality instrumentation, non-expert programmers face considerable challenges in delivering robust and accurate instrumentation outside of the lab environment. Furthermore, when one considers how to fuse data across multiple peripherals, the heterogeneity of peripheral performance significantly complicates recording useful data. To that end, this paper seeks to describe our approach for delivering a robust, accurate, and scalable framework for motion-based gaming peripherals, specifically targeted at physical therapy in the clinical and research settings. We describe the principles of our framework and composition of data flow through a variety of illustrative examples. Finally, we conclude with several experimental setups designed to demonstrate the efficacy of the framework drawn directly from our experience in live clinical settings.
Benjamin Bockstege, Aaron Striegel
Healthcom1
2012 CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED
abstract
Abstract Summary: CytoSEED is a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created using the Model SEED. The CytoSEED plugin enables users of the Model SEED to create informative visualizations of the reaction networks generated for their organisms of interest. These visualizations are useful for understanding organism-specific biochemistry and for highlighting the results of flux variability analysis experiments. Availability and Implementation: Freely available for download on the web at http://sourceforge.net/projects/cytoseed/. Implemented in Java SE 6 and supported on all platforms that support Cytoscape. Contact: [email protected] Supplementary information: Installation instructions, a tutorial, and full-size figures are available at http://www.cs.hope.edu/cytoseed/.
Matthew DeJongh, Benjamin Bockstege, Paul Frybarger, Nicholas L. Hazekamp, Joshua Kammeraad, Travis McGeehan
Bioinform.2